Detailed information on CNT30534636


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 1e-179

BLAST vs NONCODE:
NONBNAT005173, E-value = 4e-67

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30621216Eucalyptus grandisCajanus cajan43.1462.2585.68475forward
CNT30119285Eucalyptus grandisCitrus clementina60.1374.0584.59662forward
CNT30556694Eucalyptus grandisPanicum hallii47.1454.2988.44519forward
CNT30337332Eucalyptus grandisCynara cardunculus59.7649.8184.35658forward

Expression of CNT30534636

Peptides detected in this lncRNA

>peptide 1 (34 aa)
EIGQDQDRLDHRKLWRTRFADKSMKVKWQIMKEN*

>peptide 2 (39 aa)
METLPLPRSSGVEGESFTACPARDGEERAMVEAAIVEWI*

>peptide 3 (43 aa)
MACTKNPNMENMASLPFLISFTLSSAKASGSSARPKGSKLPPG*

>peptide 4 (46 aa)
MPLRARSSGKTHPRAPSMAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 5 (71 aa)
MGLGAWRGPGRTMGSRMRRACRRSSSWRLSHCRGAREWRGRASPPVRRGMGRREPWWKLPLLSGFESLTSV*

Sequence

>CNT30534636
GAAATTGGGCAAGATCAAGATCGCTTGGACCATAGAAAGCTTTGGAGGACAAGGTTTGCAGATAAATCTATGAAGGTTAAGTGGCAAATAATGAAGGAAA
ACTAGGGAACAAACGTGGGAGTCGAGTCGAAAAAGGAAGGAAGATGATTGAAGATGTCACTCAAGAGTCAAGCCAGCGGCAATACATGTAATTTACACTT
CTGAAAGTATCGTTTCCAACCGAACTGTATATCACCCCTCACGCTCACTTTCCAGGGACGAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTAACTGGAT
CAGCAAGGTGGTCAGCCAAGTTCTCCAATGGACCCTTTCCTGTCACAATGGCCTGCACGAAGAACCCAAACATGGAGAACATGGCAAGCCTGCCGTTCTT
GATCTCCTTCACCTTGAGCTCGGCAAAGGCCTCAGGGTCATCGGCCAGGCCCAAGGGGTCGAAGCTCCCCCCGGGGTAGAGCGGGTCGGTGACCTCACCG
AGCGGGCCACCAGCAATACGGTAACCCTCGACGGCTCCCATCAGGATGACTTGGCAGGCCCAGATGGCCAAGATGCTTTGGGCGTGGATCAGGTTGGGGT
TGCCCAGGTAGTCGAGCCCTCCCTCGCTAAAGATCTGGGCGCCAGCCTTGAACCACACGGCCTCACCGAACTTGATGCCGTTGCGGGCCAGGAGCTCGGG
GAAGACGCACCCCAGGGCACCGAGCATGGCCCACCTGCAGTGGATGACTTCAAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCGGCCGAGAGTCCGGCG
GTGTCCCAGCCGTAGTCACCGGGGAACTCGCCAGTGAGGTAGCTTGGGGGCTCGCCGGAGAATGGGCCTAGGTGCTTGGCGCGGTCCGGGCCGTACCATG
GGCTCCCGGATGAGACGGGCTTGCCGACGGTCTTCCTCATGGAGACTCTCCCATTGCCGAGGAGCTCGGGAGTGGAGGGGGAGAGCTTCACCGCCTGTCC
GGCGAGGGATGGGGAGGAGAGAGCCATGGTGGAAGCTGCCATTGTTGAGTGGATTTGAGAGCTTGACTTCTGTCTAGTGTTGAAAGAGAGAGTTGAGATG
G