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Detailed information on CNT30616124


BLAST search results

BLAST vs Swiss-Prot:
sp|P27491|CB27_TOBAC, E-value = 2e-163

BLAST vs NONCODE:
NONBNAT007398, E-value = 3e-96

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641326Sesamum indicumNymphaea colorata52.6753.882.86601forward
CNT30534416Sesamum indicumEucalyptus grandis58.0258.7986.56662forward
CNT30316082Sesamum indicumCorylus avellana57.2368.6687.14653forward
CNT30373848Sesamum indicumArabidopsis thaliana57.9363.1382.15661forward
CNT30500907Sesamum indicumCoffea canephora57.7670.4186.65659forward
CNT30269327Sesamum indicumChenopodium quinoa45.6659.5485.03521forward
CNT30728214Sesamum indicumCorchorus capsularis36.3749.2987.23415forward
CNT30380511Sesamum indicumManihot esculenta31.1150.4389.3355forward
CNT30525395Sesamum indicumPhaseolus vulgaris57.4964.3885.21656forward
CNT30629263Sesamum indicumVigna unguiculata51.4557.0585.01587forward
CNT30504491Sesamum indicumNicotiana attenuata58.0269.8388.37662forward
CNT30709739Sesamum indicumGlycine max44.8753.8484.96512forward
CNT3046618Sesamum indicumPrunus dulcis56.1876.6782.06641forward
CNT30633568Sesamum indicumCapsicum annuum57.4170.4389.62655forward
CNT3091810Sesamum indicumSolanum tuberosum57.6769.4189.67658forward
CNT30225131Sesamum indicumHordeum vulgare57.2358.5783.15653forward
CNT30383589Sesamum indicumTriticum turgidum53.0279.583.64605forward
CNT30562273Sesamum indicumActinidia chinensis54.3462.5686.94620forward
CNT3088186Sesamum indicumVigna radiata56.9759.6385.08650forward
CNT30508817Sesamum indicumSolanum lycopersicum57.4166.0389.01655forward
CNT30146180Sesamum indicumMedicago truncatula56.4467.0883.54644forward
CNT30313780Sesamum indicumCamelina sativa57.7658.1681.94659forward
CNT30598305Sesamum indicumFraxinus excelsior37.9563.485.45433forward
CNT30609649Sesamum indicumGossypium raimondii50.4876.0986.63576forward
CNT30714756Sesamum indicumMalus domestica golden45.9251.6387.98524forward
CNT30623366Sesamum indicumDaucus carota57.0662.5484.64651forward
CNT30686710Sesamum indicumTriticum urartu57.4973.2183.08656forward
CNT30621493Sesamum indicumCajanus cajan56.9748.4485.85650forward
CNT30359492Sesamum indicumLactuca sativa51.4568.6585.35587forward
CNT30153357Sesamum indicumPrunus persica57.4937.1582.16656forward
CNT30705057Sesamum indicumPrunus avium49.6168.4482.69566forward
CNT3055180Sesamum indicumAmborella trichopoda52.9458.4782.78604forward
CNT30119285Sesamum indicumCitrus clementina56.9772.7187.23650forward
CNT30337332Sesamum indicumCynara cardunculus57.4949.6685.52656forward
CNT30725332Sesamum indicumLupinus angustifolius57.4963.6984.3656forward

Expression of CNT30616124

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLAKVSGSAESPAVSHP*

>peptide 2 (35 aa)
MENIASLPFLISLTLSSAKASGSSASPNGSKLPPG*

>peptide 3 (44 aa)
MDFPPLFASYFQFSQLFLVSFSLLILLHRRSTIFQHPIATAPPP*

>peptide 4 (30 aa)
MGQSLWRRPRRCCLLGQRGGQRGSPTGPFR*

>peptide 5 (31 aa)
MGRSCRLGRVGRSPHRAAHQQYGNPQQLPSK*

>peptide 6 (68 aa)
MDQAWVTQVVKTTLAEDLCSGLEPNRLTELDTVAGQELREDATKSSKHGPSAVDHLKFTVLGKGLWVS*

Sequence

>CNT30616124
TGATTATCAATTAATTATCAAAATATATTATTCATTGAGTGTAAGGTAAATAAAATATTTAACCAAAAAGGCAGAAATTACAATAAAAATAAATAAATAG
AACAATTCGGATGAAAATCTAGTAAATGGATTTCCCCCCTCTTTTTGCTTCATATTTCCAATTTTCGCAGCTCTTTTTGGTTTCCTTCTCTTTACTTATC
CTTCTCCACCGCCGTTCCACTATTTTCCAGCACCCAATAGCCACAGCGCCACCACCGTAGCCGAGAATCGGCGATCCAGCCTCGGCCAATGGATTTCTGT
GCCGTTCCACCGGTCTAAATCGGGTAGAGTGCGGAATTTGCTTGTCCGCGGTATAGCCGAGAGATTCCGGAGGTTTGGCTTAGTTCGCCTTCATATTTGC
CCTCTGGCCGATAAATCCACCTTCCGGCGATAAATGGTTGTATGTGACTGTAGTGTTGCAAATATCTTCCGTAATGGGACAAAGTTTGTGGCGTAGGCCC
AGGCGTTGTTGTTTACTGGGTCAGCGAGGTGGTCAGCGAGGTTCTCCAACGGGCCCTTTCCGGTGACGATGGCCTGAACAAAGAATCCGAACATGGAGAA
CATCGCAAGTCTGCCGTTCTTGATCTCCTTAACCTTGAGCTCAGCGAAGGCTTCTGGGTCATCAGCCAGCCCCAATGGGTCGAAGCTGCCGCCTGGGTAG
AGTGGGTCGGTCACCTCACCGAGCGGCCCACCAGCAATACGGTAACCCTCAACAGCTCCCATCAAAATAACTTGGCAAGCCCAGATTGCCAAGATGCTCT
GTGCATGGATCAAGCTTGGGTTACCCAAGTAGTCAAGACCACCCTCGCTGAAGATCTGTGCTCCGGCCTTGAACCAAACCGCCTCACCGAACTTGACACC
GTTGCGGGCCAAGAGCTCAGGGAAGACGCAACCAAGAGCTCCAAGCATGGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCT
GGGTCAGCTGAAAGTCCGGCGGTATCCCATCCATAGTCACCTGGGAATTCACCAGTGAGGTAGCTCGGGGGCTCACCGGAGAATGGGCCCAAGTACTTGA
CACGGTCTGGACCGTACCATGGGCTGCCAGATGAGACGGGC