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Detailed information on CNT30609649


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 3e-166

BLAST vs NONCODE:
NONMTRT001605, E-value = 3e-89

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Gossypium raimondiiEucalyptus grandis75.5650.7585.66572forward
CNT30315824Gossypium raimondiiCorylus avellana77.1555.2585.62584forward
CNT30702989Gossypium raimondiiQuercus lobata79.2662.8380.83600forward
CNT30373848Gossypium raimondiiArabidopsis thaliana76.3555.2182.01578forward
CNT30500907Gossypium raimondiiCoffea canephora79.6664.4285.9603forward
CNT30616124Gossypium raimondiiSesamum indicum76.0950.4886.63576forward
CNT30269327Gossypium raimondiiChenopodium quinoa60.115286.15455forward
CNT30525395Gossypium raimondiiPhaseolus vulgaris74.7755.5484.1566forward
CNT30628736Gossypium raimondiiVigna unguiculata69.7571.3584.66528forward
CNT30504491Gossypium raimondiiNicotiana attenuata77.1561.686.13584forward
CNT30709643Gossypium raimondiiGlycine max55.7543.8285.55422forward
CNT3046618Gossypium raimondiiPrunus dulcis73.1866.2783.03554forward
CNT30633494Gossypium raimondiiCapsicum annuum77.286486.15585forward
CNT3099363Gossypium raimondiiSolanum tuberosum77.1555.8986.47584forward
CNT30562273Gossypium raimondiiActinidia chinensis79.2660.5486600forward
CNT3088186Gossypium raimondiiVigna radiata76.0952.8485.24576forward
CNT30538977Gossypium raimondiiBrassica napus75.5669.1781.47572forward
CNT30235067Gossypium raimondiiBrassica oleracea58.9262.8281.61446forward
CNT30508703Gossypium raimondiiSolanum lycopersicum77.1561.6785.96584forward
CNT30173250Gossypium raimondiiTrifolium pratense74.1148.6683.78561forward
CNT30146374Gossypium raimondiiMedicago truncatula76.3561.4984.08578forward
CNT30310534Gossypium raimondiiCamelina sativa75.5648.3181.64572forward
CNT3078262Gossypium raimondiiBrassica juncea67.2473.9881.93509forward
CNT30598305Gossypium raimondiiFraxinus excelsior56.1462.2385.65425forward
CNT30714756Gossypium raimondiiMalus domestica golden68.8251.3384.26521forward
CNT30623366Gossypium raimondiiDaucus carota78.7357.2583.89596forward
CNT30621493Gossypium raimondiiCajanus cajan78.8644.4985.09597forward
CNT30359492Gossypium raimondiiLactuca sativa72.7964.4484.21551forward
CNT30153357Gossypium raimondiiPrunus persica75.1732.2282.43569forward
CNT30429024Gossypium raimondiiPapaver somniferum77.8147.8580.14589forward
CNT30705057Gossypium raimondiiPrunus avium67.6461.9182.62512forward
CNT3055180Gossypium raimondiiAmborella trichopoda69.0950.6382.22523forward
CNT30119285Gossypium raimondiiCitrus clementina77.2865.4487.01585forward
CNT30337332Gossypium raimondiiCynara cardunculus76.2243.6883.71577forward
CNT30725299Gossypium raimondiiLupinus angustifolius77.2857.6983.76585forward

Expression of CNT30609649

Peptides detected in this lncRNA

>peptide 1 (39 aa)
DKVGGIGPSIVVDWVSKVVSQVLQWSLSGHDGLNEEPEH*

>peptide 2 (68 aa)
MDQAWVTQVVKSTLTEDLRPGLEPYSFAELDTVPSQQLRENTPKSSQHGPSAVNDFELTVPSKGLGIS*

>peptide 3 (40 aa)
MPLGHQQDPMGQSYHLGTMGQSLHRVVHRQYGNPRRLPSR*

>peptide 4 (42 aa)
METRPVPRISGVEGENFTALPANDGEERAMVVEAIVKQLILLV

>peptide 5 (44 aa)
MVAHRKEQAWWFSSWKHGQFPGFQGWKGRTSLPYRRMMGKKEPW*

Sequence

>CNT30609649
GACAAAGTTGGTGGCATAGGCCCAAGCATTGTTGTTGACTGGGTCAGCAAGGTGGTCAGCCAAGTTCTCCAATGGTCCCTTTCCGGTCACGATGGCCTGA
ACGAAGAACCCGAACATTGAGAACATAGCCAACCTACCGTTCTTGATCTCTTTCACCTTGAGCTCAGCGAATGCCTCTGGGTCATCAGCAAGACCCAATG
GGTCAAAGCTACCACCTGGGTACAATGGGTCAGTCACTTCACCGAGTGGTCCACCGGCAATACGGTAACCCTCGACGGCTCCCATCAAGATAACTTGGCA
AGCCCAGATGGCCAAAATGCTTTGAGCATGGATCAAGCTTGGGTTACCCAAGTAGTCAAGTCCACCCTCACTGAAGATTTGAGACCCGGCCTTGAACCAT
ACAGCTTCGCCGAACTTGACACCGTTCCTAGCCAACAGCTCAGGGAAAACACACCCAAGAGCTCCCAACATGGCCCATCTGCAGTGAATGACTTCGAGCT
CACGGTTCCTAGCAAAGGTCTCGGGATCAGCTGAGAGTCCAGCAGTGTCCCAACCATAGTCACCAGGGAACTCACCGGTCAAGTAAGATGGTGGCTCACC
GGAAAGAACAGGCTTGGTGGTTTTCCTCATGGAAACACGGCCAGTTCCCCGGATTTCAGGGGTGGAAGGGGAGAACTTCACTGCCTTACCGGCGAATGAT
GGGGAAGAAAGAGCCATGGTAGTAGAGGCCATTGTGAAGCAATTGATTTTGTTGGTG