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Detailed information on CNT30173250


BLAST search results

BLAST vs Swiss-Prot:
sp|P12331|CB22_ORYSJ, E-value = 4e-122

BLAST vs NONCODE:
NONMTRT001605, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500907Trifolium pratenseCoffea canephora49.7861.3281.01574forward
CNT30525395Trifolium pratensePhaseolus vulgaris49.7856.3382.4574forward
CNT30504491Trifolium pratenseNicotiana attenuata48.9259.4983.69564forward
CNT30709059Trifolium pratenseGlycine max38.5182.2282.21444forward
CNT30633518Trifolium pratenseCapsicum annuum49.4462.3682.81570forward
CNT3091201Trifolium pratenseSolanum tuberosum48.5756.3984.29560forward
CNT30508942Trifolium pratenseSolanum lycopersicum49.4454.2384.04570forward
CNT30146180Trifolium pratenseMedicago truncatula50.0460.191.85577forward
CNT30598305Trifolium pratenseFraxinus excelsior36.3461.3582.34419forward
CNT30609649Trifolium pratenseGossypium raimondii48.6674.1183.78561forward
CNT30623258Trifolium pratenseDaucus carota49.8758.3281.74575forward
CNT30621493Trifolium pratenseCajanus cajan49.7842.7783.28574forward
CNT30359492Trifolium pratenseLactuca sativa45.5361.482.48525forward
CNT30337332Trifolium pratenseCynara cardunculus49.6143.380.94572forward
CNT30725370Trifolium pratenseLupinus angustifolius50.0454.5483.36577forward

Expression of CNT30173250

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGRSSLRGRVGRQLLQEVHQQYGNPQQHPLR*

>peptide 2 (56 aa)
MKQSIHHVLLNYCHEIKNTIISNNYKQFTMLYSSHXXXXXLTFPGQSLWQRPKHCC*

Sequence

>CNT30173250
CAGATGGAGTAATTTTTAAGTTTCTATTAAGATATTAATTTTTTAATCAATGATCATTGATTATTCTAAATGATCTTTGGACTAAATAATGTGTCTTTTT
TTCTCTAGATTATTACGTTTCATGTGGTATATTGAACTTTTATCACTACTATAACTAATATTCATTCATTTCTTTATTCTTATTTAACTTTTATTTTTCT
ATTTATTTATTTAGAGCCTGTACTTATGAAACAATCAATTCATCATGTTCTTTTAAATTATTGCCATGAAATCAAGAATACAATAATAAGTAATAACTAC
AAGCAATTCACAATGTTATATTCAAGTCACTCNNNNNNNNNNNTGCTCACTTTCCCGGGGCAAAGTTTGTGGCAAAGGCCCAAGCATTGTTGTTGACAGG
GTCAGCAAGGTGGTCAGCAAGATTCTCTATAGGACCTTTTCCGGTTACAATAGCTTGAACGAAGAATCCAAACATAGAGAACATAGCTAACCTACCATTT
TTGAGTTCTTTCACCTTTAACTCTGCAAAAGCCTCGGGGTCTTCAGCGAGGCCCAATGGGTCGAAGCTCCCTCCGGGGAAGAGTGGGTCGACAACTTCTC
CAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCACCCATTAAGATAACTTGGACAGCCCATATAGCAAGGATACTTTGCGCATGGACTAGGCTTGG
GTTACCCAAGTAGTCAAGTCCACCTTCACTGAAGATTTGAGATCCTGCCTTGAACCAAACAGCCTCGCCGAATTTGACACCATTGCGAGCCAAGAGCTCA
GGGAAGACACATCCCAAGGCACCCAACATAGCCCATCTACTGTGGATGACCTCGAGTTCACGATTTTTCGAAAAGGTCTCTGGATCAGCTGAAAGTCCGG
CAGTGTCCCAACCATAGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGTCTGGACCGTACCATGGACTACCAG
AAGAAACTTTCTTTGGGGTCGTTTTTCTCATTGTGATTCTTCCCACTCCAAAGTCCTGAGTGGATGGGGAAAGTTTGATGGCTTTCCCAACCAATGTTGA
AGAAGAGAGAGACATTGTTGAAGCGGCCATTGTAGCTAGTATTTTTAGTGCTT