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Detailed information on CNT30508942


BLAST search results

BLAST vs Swiss-Prot:
sp|P07370|CB2B_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-172

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702989Solanum lycopersicumQuercus lobata62.1368.3880.86653forward
CNT30380511Solanum lycopersicumManihot esculenta32.9249.1587.57346forward
CNT30173250Solanum lycopersicumTrifolium pratense54.2349.4484.04570forward
CNT30146180Solanum lycopersicumMedicago truncatula62.4268.3385.06656forward
CNT30140466Solanum lycopersicumLolium perenne58.5257.6482.28615forward
CNT30623366Solanum lycopersicumDaucus carota62.1362.7386.68653forward
CNT30621493Solanum lycopersicumCajanus cajan62.1348.6683.77653forward
CNT30359492Solanum lycopersicumLactuca sativa56.5269.4785.02594forward
CNT30429024Solanum lycopersicumPapaver somniferum59.6650.9382.3627forward
CNT30337332Solanum lycopersicumCynara cardunculus62.1349.4386.52653forward

Expression of CNT30508942

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVILPFPEISEAEGESFTACPAKEGEERAIVAAAMVFKERKMRELLV*

>peptide 2 (68 aa)
MDQAWVAQVVKSTLAENLGTGLEPHSFTKFDTITGQELREDTSKSTKHSPSAVDHLKFTVLGKGFRVC*

>peptide 3 (67 aa)
MPPGLQQGLMGRSCHLGRVGRQPHQEVHQQYGNPQQLPSVQLDKPRWPRCFVHGPSLGCPSSQVHPR*

Sequence

>CNT30508942
CTTTTTTGCTCTGTTCTCTTTCTTTGATTATCCTTTGTTATGAAAGTGGCAACATTTGATTCATAGCTTAGTAAGATGTTACTCAGTACTACACAAACAT
TGAAATATTAAAGAAAAACAATCCATTCTATTGTCAAGTAACTCACTACTACTTTACAAGGAATATTAAGATTGTTTAAAAAGTTTCATTTTCCGGGGAC
AAAGTTTGTGGCAAAAGCCCAAGCGTTGTTGTTAACGGGGTCTGCAAGGTGGTCAGCAAGATTCTCCAATGGACCCTTTCCGGTAACAATGGCTTGAACA
AAGAATCCAAACATAGAGAACATAGCAAGTCTGCCGTTCTTAATCTCCTTTACCTTGAGCTCAGCAAATGCCTCCGGGTCTTCAGCAAGGCCTAATGGGT
CGAAGCTGCCACCTGGGTAGAGTGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCCTCAACAGCTCCCATCAGTACAACTTGACAAGC
CCAGATGGCCAAGATGCTTTGTGCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAAATCTGGGAACCGGCCTTGAACCACACA
GCTTCACCAAATTTGACACCATTACGGGCCAAGAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCAC
GGTTCTTGGCAAAGGTTTCAGGGTCTGCTGAGAGTCCAGCGGTATCCCAGCCGTAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGACTCACCAGA
GAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGACTGCTAGATGGGGCAGACTTGGCAACAGCCTTTCTCATGGTGATCCTTCCATTTCCA
GAGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCGGCAAAAGAAGGAGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTTTAAAGAGAGGA
AAATGAGGGAGTTGCTAGTTTGATATGTAAAAGTTAGTTGTGATGAGCTGA