Detailed information on CNT3091443


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 7e-159

BLAST vs NONCODE:
NONSTUT001352, E-value = 8e-124

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3088186Solanum tuberosumVigna radiata63.4658.6282.47639forward
CNT30146084Solanum tuberosumMedicago truncatula63.3661.4685.58638forward
CNT30357114Solanum tuberosumLactuca sativa51.0456.2487.55514forward
CNT30337332Solanum tuberosumCynara cardunculus63.8548.6886.63643forward

Expression of CNT3091443

Peptides detected in this lncRNA

>peptide 1 (90 aa)
VAHYIFTRSSNDQKLENVLIFLFSGDKVCGVGPCVVVDWVCKVVSKVLQWTLSGNNGLNEESKHREHSKSAVLNLLYFELSKCLWVFSKA*

>peptide 2 (67 aa)
MPLGLQQGLMGQSCHQGRVGRQPHQEVHQQYGNLQRLPSRQLGKPRWPRCSVHGPSLGCPSSQVHPR*

>peptide 3 (36 aa)
STLHLYTVIKRPETRECFNIFIFRGQSLWRRTMRCC*

>peptide 4 (36 aa)
MDQAWVAQVVKSTLAEDLGSGLEPHSLTELDTITGQ*

Sequence

>CNT3091443
GTAGCACACTACATCTTTACACGGTCATCAAACGACCAGAAACTAGAGAATGTTTTAATATTTTTATTTTCCGGGGACAAAGTTTGTGGCGTAGGACCAT
GCGTTGTTGTTGACTGGGTCTGCAAGGTGGTCAGCAAGGTTCTCCAATGGACCCTTTCCGGTAACAATGGCCTGAACGAAGAATCCAAACATAGAGAACA
TAGCAAGTCTGCCGTTCTTAATCTCCTTTACTTTGAGCTCAGCAAATGCCTCTGGGTCTTCAGCAAGGCCTAATGGGTCAAAGCTGCCACCAGGGTAGAG
TGGGTCGACAACCTCACCAAGAGGTCCACCAGCAATACGGTAACCTTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGT
GCATGGACCAAGCTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAAGATCTGGGATCCGGCCTTGAACCACACAGCCTCACCGAACTTGACACCAT
TACGGGCCAATAGCTCAGGGAAGACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCAAGTTCACGGTTCTTGGCAAAGGTCTCAGG
GTCTGCTGAAAGTCCAGCGGTATCCCATCCATAGTCACCAGGGAATTCGCCAGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACA
CGGTCCGTAGTCACCAGGGAATTCACCGGTCAAGTAGCTTGGGGACTCACCAGAGAATGGGCCCAAGTACTTAACACGGTCAGGGCCATACCATGGGCTG
CTAGATGGGGCAGACTTGGCGACAGCCTTTCTCATAGTGATCCTTCCATTTCCAGTGATTTCTGAGGCAGAGGGTGAGAGTTTCACTGCCTGTCCAGCAA
AAGAAGGGGAAGAAAGAGCCATTGTAGCAGCTGCCATGGTTTATAAAGAGAGGAAAGTGAGGGGGTTGCTAGTTTGATATGTAAAAGTTAGTTGTGATGA
GCTGAAG