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Detailed information on CNT30315829


BLAST search results

BLAST vs Swiss-Prot:
sp|P09756|CB23_SOYBN, E-value = 9e-177

BLAST vs NONCODE:
NONBNAT007398, E-value = 4e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Corylus avellanaEucalyptus grandis70.5659.5484.8671forward
CNT30373848Corylus avellanaArabidopsis thaliana70.2463.882.93668forward
CNT30337332Corylus avellanaCynara cardunculus69.1949.8185.87658forward

Expression of CNT30315829

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLEWMTSSSRFFAKVSGSAESPAVAQP*

>peptide 2 (72 aa)
QRFRGEVLQVIHILCNFEEKSFTGSQYLRLTFRGRSLWRKPRHCCLLGRQGGQRGSPMAPFQSQWPEQRTQT*

>peptide 3 (31 aa)
MGQSFHLGRWGPSPHRVAHRQYGNPQQHPSR*

>peptide 4 (40 aa)
METRPTPSSGVDGATCTALPANDGEERAIVEAAIVELRLE*

Sequence

>CNT30315829
TCAGAGATTCAGAGGAGAAGTACTACAGGTAATTCACATTTTGTGCAATTTTGAGGAGAAAAGCTTCACGGGGTCTCAATATCTCCGGCTCACTTTCCGG
GGACGAAGTTTGTGGCGTAAGCCCAGGCATTGTTGTTTACTGGGTCGGCAAGGTGGTCAGCGAGGTTCTCCAATGGCCCCTTTCCAGTCACAATGGCCTG
AACAAAGAACCCAAACATAGAGAACATAGCCAATCTTCCATTCTTGAGCTCCTTCACCTTAAGCTCAGCAAAAGCTTCCGGGTCATCAGCAAGACCCAAT
GGGTCAAAGCTTCCACCTGGGTAGATGGGGTCCGTCACCTCACCGAGTGGCCCACCGGCAATACGGTAACCCTCAACAGCACCCATCAAGATGACCTGAG
TTGCCCAGATGGCCAGAATGCTTTGCGCGTGGACCAAGCTCGGGTTGCCCAAGTAGTCAAGACCGCCTTCGCTGAAGATCTGAGCTCCGGCCTTGAACCA
CACGGCCTCGCCGAACTTGACGCCGTTCCGGGACAAGAGCTCCGGGAAGACGCACCCGAGGGCTCCAAGCATGGCCCATCTGGAGTGGATGACTTCCAGC
TCACGGTTCTTTGCAAAGGTCTCTGGGTCGGCGGAAAGCCCAGCAGTGGCCCAGCCATAGTCACCGGGGAATTCTCCAGTAAGGTAGGATGGGGGCTCAC
CGGAGAATGGGCCCAAGTACTTGACACGGTCAGGGCCGTACCATGGGCTGCCGGAGGAAGCCTGCTTGAAGGCTGTTTTCCTCATGGAGACACGTCCAAC
ACCAAGCTCCGGGGTTGACGGAGCAACCTGCACCGCCTTGCCGGCAAATGATGGGGAAGAGAGAGCCATTGTTGAAGCAGCCATTGTAGAATTGAGGTTA
GAATAGAGAAAGAGACAGCAATGCAAGGGAAGGAGTGATCGATGGGTGTTT