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Detailed information on CNT30538977


BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 7e-153

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315824Brassica napusCorylus avellana71.4655.9181.39591forward
CNT30373848Brassica napusArabidopsis thaliana71.156.1692.01588forward
CNT30235067Brassica napusBrassica oleracea56.3565.6395.71466forward
CNT30310534Brassica napusCamelina sativa70.9849.5890.97587forward
CNT3078262Brassica napusBrassica juncea64.4577.4794.56533forward
CNT30609649Brassica napusGossypium raimondii69.1775.5681.47572forward
CNT30623083Brassica napusDaucus carota70.7456.281.37585forward
CNT30119285Brassica napusCitrus clementina71.165.7781.63588forward
CNT30337332Brassica napusCynara cardunculus70.544.1381.82583forward
CNT30725370Brassica napusLupinus angustifolius70.6255.280.65584forward

Expression of CNT30538977

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MVGKILQRSLSGDNSLNKESKHREHSQPSVLDLLHLQLRESLWISSKTQRVEAASWVEQVLCFSQWSLSSDSVTLNSSHEDHLSRPNG*

>peptide 2 (33 aa)
LRNEVRFLINHTKIRQRKFNKYTNNLFRCCSLA*

>peptide 3 (29 aa)
MAHLQWITSSSRFLAKVSGSAERPAVSHP*

Sequence

>CNT30538977
TTGAGAAATGAGGTTCGGTTTCTGATAAATCATACAAAGATACGACAAAGGAAGTTTAACAAATATACAAACAATCTCTTTCGCTGCTGCTCACTCGCAT
GATAATAACCTTTTAATTCATTCACTTTCCAGGGACGAAGTTGGTGGCAAAGGCCCATGCGTTGTTGTTGACTGGATCAGCCAAATGGTCGGCAAGATTC
TCCAACGGTCCCTTTCCGGTGACAATAGCCTGAACAAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGATCTCCTTCACCTTCAACTCCG
CGAAAGCCTCTGGATCAGTAGCAAGACCCAGCGGGTCGAAGCTGCCTCCTGGGTAGAGCAAGTCCTCTGCTTCTCCCAATGGTCCCTCTCCAGCGACTCT
GTAACCCTCAACAGCTCCCATGAGGATCACCTGAGTCGCCCAAATGGCTAAGATGCTTTGAGCGTGAACCAAGCTCGGGTTTCCCAAGTAGTCGAGCCCT
CCTTCGCTGAAGATCTGTGAACCAGCCTTGAACCAAACAGCTTCTCCGAACTTCACTCCGTTCCTAGCCAAAAGCTCAGGGAAAACGCAGCCTAGGGCTC
CGAGCATGGCCCATCTGCAGTGGATCACTTCTAGCTCACGGTTCCTGGCGAAGGTCTCGGGGTCAGCGGAAAGACCGGCGGTGTCCCATCCGTAGTCACC
AGGGAACTCTCCTGCTCCTGGTGAGAGCTTCACGGCCTTTCCGGCAAAGGCAGGGGAGGACAGAGCCATGGTTGAGGCAGCCATTAGAAATTTTCTTGAT
CTTTTTTAGTTTTTGTGTTTTTTTTTG