Detailed information on CNT30633439


BLAST search results

BLAST vs Swiss-Prot:
sp|P27493|CB22_TOBAC, E-value = 3e-177

BLAST vs NONCODE:
NONSTUT001352, E-value = 1e-147

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30714756Capsicum annuumMalus domestica golden58.0451.9285.2527forward
CNT30356894Capsicum annuumLactuca sativa56.6156.2487.94514forward
CNT30337332Capsicum annuumCynara cardunculus72.2549.6686.59656forward

Expression of CNT30633439

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MVSKVLQWTLSCNNGLNKESKHREHSKSTVLDLLYLELSKCLWIISKTQWVKAATRV*

>peptide 2 (49 aa)
MEILPFPEISESDGESFTACPAKEGEERAIVAAAMVYKEESEGVTSLICQ

>peptide 3 (36 aa)
HSQQLYKAIKQSNFKNYIMIFIFQEQSLWRRPRHCC*

>peptide 4 (68 aa)
MDQTWVAQVVKSTLAEYLGSSLEPHSLTKLDTITGQELGENTSKSTKHSPSAVDHLEFTVLGKGFRVC*

>peptide 5 (67 aa)
MPLDHQQDPMGQSCHQGIVGRLPRQEAHQQYGIPQRLPSRQLGKPRWPRCSVHGPNLGCPSSQVHPR*

>peptide 6 (39 aa)
MRLAWRQSFSWRSFHFQRFLSQMVRASLPVRQKKGKKEP*

Sequence

>CNT30633439
TCACTCACAACAACTTTACAAGGCCATCAAACAATCAAATTTTAAGAATTATATTATGATATTCATTTTCCAGGAACAAAGTTTGTGGCGTAGGCCCAGG
CATTGTTGTTAACCGGATCTGCTAGATGGTCAGCAAGGTTCTCCAATGGACCCTTTCCTGTAACAATGGCCTGAACAAAGAATCCAAACATAGAGAACAT
AGCAAGTCTACCGTTCTTGATCTCCTTTACCTTGAGCTCAGCAAATGCCTCTGGATCATCAGCAAGACCCAATGGGTCAAAGCTGCCACCAGGGTATAGT
GGGTCGACTACCTCGCCAAGAGGCCCACCAGCAATACGGTATCCCTCAACGGCTCCCATCAAGACAACTTGGCAAGCCCAGATGGCCAAGATGCTCTGTG
CATGGACCAAACTTGGGTTGCCCAAGTAGTCAAGTCCACCCTCGCTGAATATCTGGGATCCAGCCTTGAACCACACAGCCTCACCAAACTTGACACCATT
ACGGGCCAAGAGCTCGGGGAAAACACATCCAAGAGCACCAAGCATAGCCCATCTGCAGTGGATCACCTCGAGTTCACGGTTCTTGGCAAAGGTTTCAGGG
TCTGCTGAAAGTCCAGCGGTATCCCACCCATAGTCACCAGGGAATTCACCAGTCAAGTAGCTTGGGGGCTCACCAGAGAATGGGCCCAAGTACTTAACAC
GGTCTGGACCATACCATGGGCTGCTAGATGCGGCTGGCTTGGAGGCAGTCTTTCTCATGGAGATCCTTCCATTTCCAGAGATTTCTGAGTCAGATGGTGA
GAGCTTCACTGCCTGTCCGGCAAAAGAAGGGGAAGAAAGAGCCATAGTAGCAGCTGCCATGGTTTATAAAGAGGAAAGTGAGGGGGTTACTAGTTTGATA
TGTCAAAG