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Detailed information on CNT30562269


BLAST search results

BLAST vs Swiss-Prot:
sp|P27495|CB24_TOBAC, E-value = 1e-176

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534338Actinidia chinensisEucalyptus grandis61.351.7385.59583forward
CNT3046618Actinidia chinensisPrunus dulcis66.5675.7281.99633forward
CNT3088186Actinidia chinensisVigna radiata66.4657.9884.02632forward
CNT30359492Actinidia chinensisLactuca sativa62.7869.8285.09597forward
CNT30153357Actinidia chinensisPrunus persica66.5635.8482.31633forward
CNT30705057Actinidia chinensisPrunus avium59.4168.3281.42565forward
CNT30337332Actinidia chinensisCynara cardunculus62.6745.1285.07596forward

Expression of CNT30562269

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWITSSSRFLAKVSGSAESPAVSQP*

>peptide 2 (47 aa)
MGRSFHRGKVDQQPHLAARQQYGSLQRLPSILLGKPKWQECFGRGSS*

>peptide 3 (32 aa)
MASLPFLISFTLSSAKASGSSARPNGSKLPPG*

>peptide 4 (57 aa)
LKRKIDIFCITTIQFTSHTFQIQNPPFNFPSLSGDKVGGISPGIVVNWVSKVVCQVL*

Sequence

>CNT30562269
TTAAAACGGAAAATTGACATTTTTTGCATTACTACAATCCAATTTACATCACACACTTTCCAAATTCAAAACCCTCCTTTTAATTTCCCCTCACTTTCCG
GGGACAAAGTTGGTGGCATAAGCCCAGGCATTGTTGTTAACTGGGTCAGCAAGGTGGTCTGCCAAGTTCTCTAATGGTCCCTTTCCGGTCACTATGGCTT
GAACAAAGAATCCAAACATAGAGAACATGGCAAGTCTACCATTCTTGATCTCCTTTACCTTGAGCTCAGCAAAAGCCTCTGGGTCGTCAGCTAGGCCCAA
TGGGTCGAAGCTTCCACCGGGGTAAAGTGGATCAACAACCTCACCTAGCGGCCCGCCAGCAATACGGTAGCCTTCAACGGCTCCCATCAATATTACTTGG
CAAGCCCAAATGGCAAGAATGCTTTGGGCGTGGATCAAGCTAGGGTTGCCCAAGTAGTCAAGCCCGCCCTCACTGAAGATCTGCGAACCGGCCTTGAACC
ATACAGCCTCACCGAACTTGACACCGTTGCGGGCCAAAAGCTCGGGAAAGACACAACCAAGAGCTCCAAGCATGGCCCATCTGCAGTGGATCACCTCCAG
TTCACGGTTCTTGGCAAAGGTTTCAGGGTCAGCTGAAAGCCCAGCAGTATCCCAACCGTAGTCACCAGGGAATTCTCCGGTCAGGTAGGAGGGGGGATCA
CCAGATAGTGGGCCCAAGTATAGAACTCGGTCTTTCCCATACCACGGGCTACCAGATGGCGTAGACTTGGTAGACTTCCTCGCGTTGACTTGGAAGACTC
TTCGTGCACCAACGCTCTCCGAGGAGGAAGGAGAGAGTTTTGCCGCCTTTCCGGCAAAAGATGGTGAAGAGAGAGACATTGAGGCAGCCATGGTTTAACA
GCCATGGTATAAGAGAAATAGCTTTTGGTATTTGGAAAGTTTAGAAAAATG