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Detailed information on CNT30373848


BLAST search results

BLAST vs Swiss-Prot:
sp|P04778|CB1C_ARATH, E-value = 0.0

BLAST vs NONCODE:
NONBNAT007398, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315829Arabidopsis thalianaCorylus avellana63.870.2482.93668forward
CNT30548768Arabidopsis thalianaIpomoea triloba22.3563.0787.18234forward
CNT30616124Arabidopsis thalianaSesamum indicum63.1357.9382.15661forward
CNT30728214Arabidopsis thalianaCorchorus capsularis28.8435.8786.42302forward
CNT30709739Arabidopsis thalianaGlycine max36.8740.5985.23386forward
CNT30538977Arabidopsis thalianaBrassica napus56.1671.192.01588forward
CNT30234343Arabidopsis thalianaBrassica oleracea62.6666.290.09656forward
CNT30508800Arabidopsis thalianaSolanum lycopersicum63.1370.8581.39661forward
CNT30171214Arabidopsis thalianaTrifolium pratense21.3921.2187.05224forward
CNT30145117Arabidopsis thalianaMedicago truncatula39.544583.33414forward
CNT30310534Arabidopsis thalianaCamelina sativa64.5757.0994.08676forward
CNT3060679Arabidopsis thalianaArabidopsis lyrata27.9848.8397.27293forward
CNT3079851Arabidopsis thalianaBrassica juncea77.1778.687.5808forward
CNT30263433Arabidopsis thalianaBrassica rapa37.1587.0290.49389forward
CNT30611387Arabidopsis thalianaArabis alpina18.7271.5390.31196forward
CNT30609649Arabidopsis thalianaGossypium raimondii55.2176.3582.01578forward
CNT30714756Arabidopsis thalianaMalus domestica golden51.6753.381.52541forward
CNT30623083Arabidopsis thalianaDaucus carota63.9964.3680.6670forward
CNT30480879Arabidopsis thalianaArabidopsis halleri24.9355.4190.04261forward
CNT30359492Arabidopsis thalianaLactuca sativa52.4464.2181.79549forward
CNT30417231Arabidopsis thalianaPapaver somniferum3447.8583.15356forward
CNT30176337Arabidopsis thalianaVigna angularis22.8323.5788.7239forward
CNT30337332Arabidopsis thalianaCynara cardunculus63.1350.0482.15661forward
CNT30725273Arabidopsis thalianaLupinus angustifolius63.5164.5680.75665forward

Expression of CNT30373848

Peptides detected in this lncRNA

>peptide 1 (45 aa)
YRTYEFYKSGYFNSIESSDKTPTQLEKKRFDFYTKIPQRKVHKFT*

>peptide 2 (88 aa)
MVGEVLQRSLSGDDGLNEESKHREHSQPSVLELLHLQLCESLGVSSEAQWVEAATWVKQVLCFSQWTISGDSVAFNSSHEDNLSSPNG*

>peptide 3 (45 aa)
MVTRPLPRTSDAAGFTAFPAKAGEDKAMVEEAIIIFVFVFSFFWL*

>peptide 4 (29 aa)
MAHLLWITSSSRFLAKVSGSADRPAVSHP*

>peptide 5 (30 aa)
MGRSCHLGKASPLLLPMDHLRRLCSLQQLP*

>peptide 6 (48 aa)
MGCLMDPLAWRQSSSWSHGRFRGHLMRQASQPFRRRQGRTKPWLRKPL*

Sequence

>CNT30373848
TACAGAACATATGAATTTTACAAGAGTGGATATTTCAATTCAATTGAGTCTTCAGATAAAACGCCAACACAGTTAGAGAAAAAGAGGTTCGATTTCTATA
CAAAGATACCACAAAGGAAAGTTCACAAATTTACATAGAATAGACCACAAACAAACTCTCTTTCTCTGCTCTCATTCACATAATAAGCAGCCGCTCACTT
TCCGGGGACGAAGTTGGTGGCGAAGGCCCAAGCGTTGTTGTTGACTGGGTCGGCCAAATGGTCGGCGAGGTTCTCCAAAGGTCCCTTTCCGGTGACGATG
GCTTGAACGAAGAATCCAAACATAGAGAACATAGCCAACCTTCCGTTCTTGAGCTCCTTCACCTTCAACTCTGCGAAAGCCTCGGGGTCAGTAGCGAGGC
CCAATGGGTCGAAGCTGCCACCTGGGTAAAGCAAGTCCTCTGCTTCTCCCAATGGACCATCTCCGGCGACTCTGTAGCCTTCAACAGCTCCCATGAGGAT
AACTTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCGTGGACCAAGCTCGGGTTGCCCAAGTAGTCCAATCCTCCGTCGCTGAAGATCTGTGAACCGGCC
TTGAACCAAACCGCTTCTCCGAACTTCACTCCGTTCCTAGCCAATAGCTCAGGGAAAACGCAGCCTAGGGCTCCGAGCATGGCCCATCTGCTGTGGATAA
CTTCTAGCTCACGGTTCCTGGCGAAGGTCTCTGGGTCGGCGGATAGACCAGCGGTGTCCCATCCGTAGTCACCGGGGAACTCACCGGTAAGGTAGCTCGG
GGGCTCGCCGGAGAATGGACCCAAGTACTTGACTCGGTCAGATCCGTACCATGGGCTGCCTGATGGACCCTTTGGCTTGGCGACAGTCTTCCTCATGGTC
ACACGGCCGCTTCCGAGGACATCTGATGCGGCAGGCTTCACAGCCTTTCCGGCGAAGGCAGGGGAGGACAAAGCCATGGTTGAGGAAGCCATTATAATCT
TTGTTTTTGTGTTTTCTTTTTTTTGGTTGTGACTGGTGAGAGTGATT