« Back to Corchorus capsularis search


Detailed information on CNT30728214


BLAST search results

BLAST vs Swiss-Prot:
sp|P06671|CB22_MAIZE, E-value = 5e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641326Corchorus capsularisNymphaea colorata51.1938.5985.38431forward
CNT30316082Corchorus capsularisCorylus avellana51.1945.3285.61431forward
CNT30373848Corchorus capsularisArabidopsis thaliana35.8728.8486.42302forward
CNT30500907Corchorus capsularisCoffea canephora49.7644.7685.2419forward
CNT30616124Corchorus capsularisSesamum indicum49.2936.3787.23415forward
CNT30269327Corchorus capsularisChenopodium quinoa47.2745.4983.42398forward
CNT30524978Corchorus capsularisPhaseolus vulgaris47.3951.2284.46399forward
CNT30629263Corchorus capsularisVigna unguiculata50.7141.585.48427forward
CNT30507950Corchorus capsularisNicotiana attenuata50.4878.1285.18425forward
CNT30709894Corchorus capsularisGlycine max56.1879.585.84473forward
CNT30633494Corchorus capsularisCapsicum annuum50.4846.585.65425forward
CNT3091645Corchorus capsularisSolanum tuberosum50.4839.0685.65425forward
CNT30564070Corchorus capsularisActinidia chinensis57.656.7383.92485forward
CNT3088186Corchorus capsularisVigna radiata50.7139.1784.31427forward
CNT30544801Corchorus capsularisBrassica napus33.1431.3188.17279forward
CNT30234343Corchorus capsularisBrassica oleracea37.4131.7986.98315forward
CNT30508800Corchorus capsularisSolanum lycopersicum50.4845.5586.59425forward
CNT30313761Corchorus capsularisCamelina sativa36.2236.4887.21305forward
CNT3079851Corchorus capsularisBrassica juncea33.0227.0486.69278forward
CNT30263433Corchorus capsularisBrassica rapa36.2268.2386.23305forward
CNT30609983Corchorus capsularisGossypium raimondii58.1960.8790.61490forward
CNT30202642Corchorus capsularisHelianthus annuus38.7258.5384.36326forward
CNT30714756Corchorus capsularisMalus domestica golden41.9234.7885.55353forward
CNT30621493Corchorus capsularisCajanus cajan51.0732.0483.72430forward
CNT30359492Corchorus capsularisLactuca sativa50.9550.1884.62429forward
CNT30119285Corchorus capsularisCitrus clementina50.4847.5487.76425forward
CNT30176340Corchorus capsularisVigna angularis50.8346.1284.11428forward
CNT30337332Corchorus capsularisCynara cardunculus49.1731.3485.27414forward
CNT30725255Corchorus capsularisLupinus angustifolius50.3642.482.78424forward

Expression of CNT30728214

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHLQWMTSSSRFLAKVSGSAERPAVSQP*

>peptide 2 (31 aa)
MGRSCHLGTMGQPPHRGVHRQYGNPRRLPSR*

>peptide 3 (46 aa)
GLKLWVNNNKKKECRQNGNAVFWSTLKFTLWSLICNKCTSDQTKKT*

Sequence

>CNT30728214
AAGGCTTAAAGCTTTGGGTAAATAATAATAAAAAAAAAGAATGTAGACAAAATGGAAATGCAGTTTTTTGGAGCACACTAAAATTCACATTATGGTCATT
GATTTGCAACAAATGTACATCAGACCAAACAAAGAAAACATAAAAGACAAATACATCTCTCTCATCTCATTCTAACTTCTAAGCTCACTTTCCGGGGACA
AAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACTGGCTCAGCGAAGGCCTCTGGGTCATCGGCAAGACCCAATGGGTCGAAGCTGCCACCTGGGTACA
ATGGGTCAACCACCTCACCGAGGGGTCCACCGGCAATACGGTAACCCTCGACGGCTCCCATCAAGATAACTTGGCAAGCCCAGATGGCCAAGATGCTCTG
AGCGTGGATCAAGCTTGGGTTTCCCAAGTAGTCGAGTCCTCCTTCGCTGAAGATCTGGGCTCCGGCCTTGAACCACACGGCTTCGCCGAACTTGACGCCG
TTCCTGGCCAAAAGCTCCGGGAAAACGCAGCCGAGAGCTCCCAACATGGCCCATCTGCAGTGGATGACCTCCAGCTCACGGTTCTTAGCGAAAGTCTCGG
GGTCAGCTGAGAGACCGGCGGTGTCCCAACCGTAGTCACCGGGGAACTCACCGGTCAAGTAGGATGGGAGCTGAGGGCTTGGTGGCCTTCCTCATGGAAA
CACGGCCATTGCCCTGGATTTCAGAGGTGGATGGGTAAAGCTTGACAGCTTTCCCGGCGAAGGTTGGGGAGGAAAGAGCCATGGTTGCGGCGGCCATTGT
GAAATATTGAGAGATTTTTTGTTTGCTGATGGGAGTTTGTGG