CANTATAdb - search

Detailed information on CNT30310534

BLAST search results

BLAST vs Swiss-Prot:
sp|P13851|CB21_SINAL, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30316100	Camelina sativa	Corylus avellana	56.59	71.05	82.54	670	forward
CNT30373848	Camelina sativa	Arabidopsis thaliana	57.09	64.57	94.08	676	forward
CNT30269346	Camelina sativa	Chenopodium quinoa	15.96	24.26	87.83	189	forward
CNT30525058	Camelina sativa	Phaseolus vulgaris	20.02	45.93	86.92	237	forward
CNT30709643	Camelina sativa	Glycine max	41.64	51.19	82.56	493	forward
CNT3046618	Camelina sativa	Prunus dulcis	53.38	75.6	80.06	632	forward
CNT30633730	Camelina sativa	Capsicum annuum	56.17	72.76	81.35	665	forward
CNT3088186	Camelina sativa	Vigna radiata	56.59	61.47	81.79	670	forward
CNT30538977	Camelina sativa	Brassica napus	49.58	70.98	90.97	587	forward
CNT30171214	Camelina sativa	Trifolium pratense	18.83	21.12	85.2	223	forward
CNT3060679	Camelina sativa	Arabidopsis lyrata	21.79	43	96.51	258	forward
CNT3078262	Camelina sativa	Brassica juncea	44.43	76.45	91.83	526	forward
CNT30609649	Camelina sativa	Gossypium raimondii	48.31	75.56	81.64	572	forward
CNT30217700	Camelina sativa	Kalanchoe fedtschenkoi	27.53	41.32	82.82	326	forward
CNT30623083	Camelina sativa	Daucus carota	56.17	63.88	81.35	665	forward
CNT30153357	Camelina sativa	Prunus persica	53.38	35.79	80.22	632	forward
CNT30417231	Camelina sativa	Papaver somniferum	30.07	47.85	83.43	356	forward
CNT30705055	Camelina sativa	Prunus avium	33.53	62.82	81.36	397	forward
CNT30176337	Camelina sativa	Vigna angularis	20.02	23.37	89.03	237	forward
CNT30337332	Camelina sativa	Cynara cardunculus	50.68	45.42	82.33	600	forward

Expression of CNT30310534

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MGRSCHLGKASPLLLPTGHLRRLCSLRQLP*

>peptide 2 (29 aa)
MAHLLWITSSSRFLAKVSGSADRPAVSHP*

>peptide 3 (46 aa)
MVTRPVPKTSEAAGDSLTAFPAKAGEERAIVEAAIAVKSVVQVKGS*

Sequence

>CNT30310534
GTCAGAGTATGCTGTTGCACAGTAGTAAGTGACTGGTCCATCAATATCATAAAGCTTCTTAAATAATTCACACTTACAAGAGATAAAATCAGCATCATAT
TTTCAAGTTTCAACAAACCAGATACACACAACTCGATCACAAACTAAACTCATTTTCCGGGGACGAAGTTGGTGGCGAAGGCCCATGCGTTGTTGTTGAC
TGGATCAGCCAAGTGGTCAGCGAGGTTCTCCAATGGCCCCTTTCCGGTGACAATGGCTTGAACAAAGAATCCAAACATAGAGAACATAGCCAACCTTCCG
TTCTTGAGCTCCTTCACCTTCAACTCCGCGAAAGCCTCGGGGTCAGTAGCGAGTCCCAATGGGTCGAAGCTGCCACCTGGGTAAAGCAAGTCCTCTGCTT
CTCCCAACGGGCCATCTCCGGCGACTCTGTAGCCTTCGACAGCTCCCATGAGGATCACTTGAGTAGCCCAAATGGCTAAGATGCTCTGAGCATGGACCAA
GCTTGGGTTGCCCAAGTAGTCCAATCCTCCGTCGCTGAAGATCTGTGAACCAGCCTTGAACCAAACCGCTTCTCCAAACTTCACTCCGTTCCGAGACAAT
AGCTCAGGGAAAACGCATCCTAGGGCTCCGAGCATGGCCCATCTGCTGTGGATAACTTCTAGCTCACGGTTCCTTGCAAAGGTCTCGGGGTCGGCGGATA
GACCGGCAGTGTCCCACCCATAGTCACCGGGGAACTCTCCAGTGAGGTAGCTAGGTGGCTCGCCAGAGAACAGACCCAAGTACTTGACTCGGTCGGATCC
GTACCATGGGCTGCCGGATGGACCGGTGGGTTTGGAGGCTTTTCGCATGGTGACTCGGCCAGTTCCAAAAACTTCAGAGGCCGCCGGAGACAGCTTAACG
GCCTTTCCAGCCAAAGCAGGAGAGGAGAGAGCCATTGTAGAGGCGGCCATTGCAGTTAAGAGTGTGGTGCAAGTAAAAGGTTCTTAGGTAAGTTGTGATG
AATTGGATCGTTCTGTTACGGTGATGTTTTAGGGTATTTGTAATGTGAAAAATGAAAATTTGAAACTCTAGGATTCAAGTTGCTTATCTCGGGAGATCAT
CATGGTCTTGATTTCTATTGGTTGTTGACATTTTTGAGCTTAGATTCTTTTGTCTTGCCGAGTTGGCATCAGTGGGTCTTGTTT