« Back to Citrus clementina search


Detailed information on CNT30119285


BLAST search results

BLAST vs Swiss-Prot:
sp|P07369|CB2G_SOLLC, E-value = 0.0

BLAST vs NONCODE:
NONBNAT007398, E-value = 9e-99

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30641326Citrus clementinaNymphaea colorata66.7853.4582.91597forward
CNT30534636Citrus clementinaEucalyptus grandis74.0560.1384.59662forward
CNT30315824Citrus clementinaCorylus avellana73.9462.5486.23661forward
CNT30514020Citrus clementinaJuglans regia29.4229.7287.83263forward
CNT30500912Citrus clementinaCoffea canephora73.9464.5583.96661forward
CNT30616124Citrus clementinaSesamum indicum72.7156.9787.23650forward
CNT30269327Citrus clementinaChenopodium quinoa59.6260.9181.61533forward
CNT30728214Citrus clementinaCorchorus capsularis47.5450.4887.76425forward
CNT30380511Citrus clementinaManihot esculenta42.3953.8486.28379forward
CNT30525395Citrus clementinaPhaseolus vulgaris75.9566.6384.54679forward
CNT30629263Citrus clementinaVigna unguiculata65.4456.8584.62585forward
CNT30507950Citrus clementinaNicotiana attenuata59.2897.4386.04530forward
CNT30709739Citrus clementinaGlycine max60.9657.3185.5545forward
CNT3046618Citrus clementinaPrunus dulcis73.678.7182.98658forward
CNT30633494Citrus clementinaCapsicum annuum70.3668.8286.17629forward
CNT3099363Citrus clementinaSolanum tuberosum70.8160.5785.78633forward
CNT30562273Citrus clementinaActinidia chinensis70.5863.6786.21631forward
CNT3088186Citrus clementinaVigna radiata74.0560.7384.59662forward
CNT30538977Citrus clementinaBrassica napus65.7771.181.63588forward
CNT30234343Citrus clementinaBrassica oleracea65.3258.9382.02584forward
CNT30508800Citrus clementinaSolanum lycopersicum72.7169.6784.92650forward
CNT30146084Citrus clementinaMedicago truncatula76.0665.5182.06680forward
CNT30313626Citrus clementinaCamelina sativa75.2858.3781.58673forward
CNT3078262Citrus clementinaBrassica juncea59.8477.7682.43535forward
CNT30609649Citrus clementinaGossypium raimondii65.4477.2887.01585forward
CNT30714756Citrus clementinaMalus domestica golden60.185385.69538forward
CNT30623366Citrus clementinaDaucus carota73.9463.582661forward
CNT30621493Citrus clementinaCajanus cajan75.1750.0784.38672forward
CNT30359492Citrus clementinaLactuca sativa69.872.9883.01624forward
CNT30153357Citrus clementinaPrunus persica75.3938.1781.9674forward
CNT30705057Citrus clementinaPrunus avium62.9868.0882.59563forward
CNT30176337Citrus clementinaVigna angularis29.0825.6488.08260forward
CNT30337332Citrus clementinaCynara cardunculus73.649.8184.95658forward
CNT30725332Citrus clementinaLupinus angustifolius74.0564.2784.59662forward

Expression of CNT30119285

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MDQSCHLGTMGQSLHRAALQQFCNPQRLPSIPPGKPRWPRCSGRGSSLGFPSSQARPR*

>peptide 2 (50 aa)
MENIANLPFLISLTLSSAKASGSSAKPNGSKLPPGYNGSVTSPSGPPAIL*

>peptide 3 (29 aa)
MAHLQWMTSSSRFLAKVSGSAESPAVSQP*

>peptide 4 (36 aa)
MEMRPPLPSSLPEGARFTALPTNDEERAIVEVAILQ*

Sequence

>CNT30119285
GCTCACTTTCCGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTGTTGACAGGGTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGG
TGACAATGGCCTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTCTTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATC
AGCCAAACCCAATGGATCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTTCACCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATC
AATACCACCTGGCAAGCCCAGATGGCCAAGATGCTCTGGGCGTGGATCAAGCTTGGGTTTCCCAAGTAGTCAAGCCCGCCCTCGCTGAAGATCTGAGCTC
CTGCCTTGAACCACACGGCCTCACCGAACTTGACTCCGTTGCGGGCCAAGAGCTCCGGGAAGACGCATCCAAGAGCTCCCAACATGGCCCATCTGCAGTG
GATGACTTCGAGTTCGCGGTTCTTGGCAAAGGTTTCTGGGTCAGCTGAAAGCCCGGCTGTGTCCCAACCGTAGTCGCCAGGGAACTCACCGGTCAAGTAG
CTTGGGGGCTCGCCAGAGAATGGGCCCAAGTACTTGACTCTGTCCGGGCCGTACCACGGGCTACCTGAAGAAACAGACTTGCTCGCGGTTTTACGCATGG
AGATGCGGCCACCATTGCCCAGCTCATTGCCTGAAGGGGCAAGGTTCACAGCCTTGCCGACGAATGATGAGGAGAGAGCCATTGTTGAGGTTGCCATTTT
GCAATGATCAGAGTTGTTGGTGAGCTCTAGTGTTCGAGTGTTGAGAGGTGAATTGGAACTTGTATATTGGTGGGTTTATTATATAATGTTTTTT