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Detailed information on CNT30508941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 5e-154

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Solanum lycopersicumEucalyptus grandis73.349.1680.41291forward
CNT30549166Solanum lycopersicumIpomoea triloba96.7357.1482.03384forward
CNT30269232Solanum lycopersicumChenopodium quinoa70.0343.7183.45278forward
CNT30403468Solanum lycopersicumBeta vulgaris72.2937.0881.88287forward
CNT30490956Solanum lycopersicumOlea europaea97.9892.6280.46389forward
CNT30710467Solanum lycopersicumGlycine max71.5439.2882.75284forward
CNT30591924Solanum lycopersicumMusa acuminata81.6160.7979.01324forward
CNT30312353Solanum lycopersicumCamelina sativa65.4963.4182.69260forward
CNT30141877Solanum lycopersicumLolium perenne58.6952.0180.26233forward
CNT3067990Solanum lycopersicumLeersia perrieri6769.8279.32266forward
CNT30205370Solanum lycopersicumHelianthus annuus72.2943.9581.53287forward
CNT30713436Solanum lycopersicumMalus domestica golden42.5752.4881.66169forward
CNT30625547Solanum lycopersicumDaucus carota67.7625.9281.78269forward
CNT30366537Solanum lycopersicumSorghum bicolor45.8420.8781.87182forward
CNT30354661Solanum lycopersicumLactuca sativa67.7648.3880.67269forward
CNT30410012Solanum lycopersicumPapaver somniferum76.8380.2680305forward
CNT3023412Solanum lycopersicumPopulus trichocarpa42.0729.5682.63167forward
CNT30103220Solanum lycopersicumOryza rufipogon81.3634.7781.73323forward

Expression of CNT30508941

Peptides detected in this lncRNA

>peptide 1 (29 aa)
AVWTRRRQLRASWRIRKGGAVSRRGIVTW*

>peptide 2 (32 aa)
MMEKSDYKRVKWGCKMAKWGCKMEKWGCRPEK*

Sequence

>CNT30508941
GCTGTATGGACTAGAAGGAGACAGCTTCGGGCTAGTTGGCGAATACGCAAGGGAGGGGCTGTATCTCGCCGAGGGATTGTAACTTGGTGATGTTGGACTG
TAGGATGGTGATGTTGGGCTATAGCTGGGAGATGTTGGGCTGTAACCAGGGGAGGTAGGACTGTAAGCAGGAGAAGTCGGACTATATGATGGAGAAGTCG
GACTATAAGAGGGTGAAGTGGGGCTGTAAGATGGCGAAGTGGGGCTGTAAGATGGAGAAGTGGGGCTGTAGGCCGGAGAAGTAGGGCTGTAGGCCGGAGA
AGTGGGGCTGTACGCTGGAGAAGTAGGGCTGTAGCTAGGTGATGTTGGGCTGTAGCTAGGCGAGGTTGGGCTATAGCTTGGAGATGTTGGACTATAA