« Back to Chenopodium quinoa search


Detailed information on CNT30269232


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 5e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30536082Chenopodium quinoaEucalyptus grandis66.9871.9679.11426forward
CNT30315993Chenopodium quinoaCorylus avellana88.9956.4380.74566forward
CNT30700558Chenopodium quinoaQuercus lobata42.399.6381.41269forward
CNT30591924Chenopodium quinoaMusa acuminata52.6762.8580335forward
CNT30508941Chenopodium quinoaSolanum lycopersicum43.7170.0383.45278forward
CNT30312227Chenopodium quinoaCamelina sativa64.6297.3980.54411forward
CNT30263540Chenopodium quinoaBrassica rapa63.9963.181.08407forward
CNT30607989Chenopodium quinoaGossypium raimondii83.3375.9380530forward
CNT30713436Chenopodium quinoaMalus domestica golden33.8166.7781.86215forward
CNT30154742Chenopodium quinoaPrunus persica68.451.8580.69435forward
CNT3028162Chenopodium quinoaTheobroma cacao77.6788.0679.96494forward
CNT30584450Chenopodium quinoaEchinochloa crusgalli62.2652.8782.58396forward

Expression of CNT30269232

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MMEMWDCKMEMWGCRLETWGCRLETWGCRLETWGCRLETWGCSLETWGCSLETWGCS*

Sequence

>CNT30269232
GTAATTTGGGGAGGTAGGGCTGTAGGGACTGGATGGTGATATTCTTGGGCTGCTTGGAGAGTATGCAAGTGATGGACTGTATTTGGCTGAAGGGTTATAG
CTTGGAGATGTAGGACTATAGCTAGGTGAAGTAGGACTATAACTTGGGGATGTAGGGCTATATCCTGGAGATGTAGGGCTGTAAGCAGGAGATGTAGGGC
TGTACGACGGAGAAGTAGGGCTGTATGATGGAGATGTGGGACTGTAAGATGGAGATGTGGGGCTGTAGGCTGGAGACGTGGGGCTGTAGGCTGGAGACGT
GGGGCTGTAGGCTGGAGACGTGGGGCTGTAGGCTGGAGACGTGGGGCTGTAGCTTGGAGACGTGGGGCTGTAGCTTGGAGACGTGGGGCTGTAGCTAGGA
GATGTGGGGCTGTAGCTTGGAGATGTGGGGCTGTAAGATGGGCTGGTGGGTGAATATGCTGGGCTTGTAGGACTATAGCCAGGAGACCCAGGACTGTAAG
TCGGGGAAGTAGGGCTATATCCAGGAGAGGTTGGACTATATCCTGGAGAAGTTGGGCTATATCCAGGAGAAGTTGGGCTATATCCAGGCGAATTTGGTGA
GAGATAAGCAGGAGATGAAGCAGGAGAGAAGGCCAT