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Detailed information on CNT30335477


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONSLYT000794, E-value = 5e-12

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535924Cynara cardunculusEucalyptus grandis44.7458.0283.53170forward
CNT30316024Cynara cardunculusCorylus avellana77.3736.5281.29294forward
CNT30376525Cynara cardunculusArabidopsis thaliana56.0527.8482.16213forward
CNT30616460Cynara cardunculusSesamum indicum48.9512.9683.33186forward
CNT30591924Cynara cardunculusMusa acuminata76.3254.4179.31290forward
CNT3087851Cynara cardunculusVigna radiata43.1617.9484.76164forward
CNT30312227Cynara cardunculusCamelina sativa72.8965.6481.23277forward
CNT3079663Cynara cardunculusBrassica juncea51.8437.0381.73197forward
CNT30263848Cynara cardunculusBrassica rapa55.7950.1281.13212forward
CNT30607691Cynara cardunculusGossypium raimondii7039.2982.33266forward
CNT30476914Cynara cardunculusArabidopsis halleri56.8438.5782.41216forward
CNT30355218Cynara cardunculusLactuca sativa75.7942.4285.42288forward
CNT30574166Cynara cardunculusVitis vinifera74.7466.283.45284forward
CNT30642028Cynara cardunculusCannabis sativa55.2641.0282.38210forward
CNT3028162Cynara cardunculusTheobroma cacao61.3241.5381.55233forward
CNT3049674Cynara cardunculusCucumis sativus66.0592.9681.67251forward

Expression of CNT30335477

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MMGRWGCMMARWGCMMVRWGCMLARWGCRQETLGCN*

Sequence

>CNT30335477
TATGGACTTGAAGGCGATAGTCTTGGACTACTAGGAGAATAAGCCAGTGACGGGCTGTACTTGGCTGATGACGGATTATAGCTTGGTGAGGTTGGACTGT
AGCTAGGTGAAGTAGGACTGTAGCTAGGTGAAGTAGGACTGTAGCCAGGGGAAGTAGGGCTGTAAGCAGGTGAGGTGGGGCTGTATGATGGGGAGGTGGG
GCTGTATGATGGCGAGGTGGGGCTGTATGATGGTGAGGTGGGGCTGTATGCTGGCGAGGTGGGGCTGTAGGCAGGAGACGTTGGGCTGTAACTAGGCGAT
GTGGGTGAGTAACTCGGAGAGGTTGGGGAGTAGCTGGGAGATGTGGGGGAGTAGCTGGGAGATGTGGGGGAGTAGCTGGG