CANTATAdb - search

Detailed information on CNT30311681

BLAST search results

BLAST vs Swiss-Prot:
sp|P18616|NRPB1_ARATH, E-value = 7e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30506121	Camelina sativa	Nicotiana attenuata	41.64	72.22	81.61	299	forward
CNT30591924	Camelina sativa	Musa acuminata	29.25	39.4	83.81	210	forward
CNT30554580	Camelina sativa	Oryza glaberrima	40.81	43.09	82.59	293	forward
CNT30256655	Camelina sativa	Avena sativa	39.14	62.58	79	281	forward
CNT30606053	Camelina sativa	Gossypium raimondii	25.77	30.63	88.65	185	forward
CNT3067979	Camelina sativa	Leersia perrieri	31.62	63.06	81.06	227	forward
CNT30205386	Camelina sativa	Helianthus annuus	35.79	35.94	82.1	257	forward
CNT30596736	Camelina sativa	Oryza meridionalis	40.81	38.81	81.91	293	forward
CNT30370935	Camelina sativa	Oryza glumipatula	40.81	30.27	82.59	293	forward
CNT30103220	Camelina sativa	Oryza rufipogon	35.38	27.34	83.86	254	forward
CNT30577473	Camelina sativa	Oryza barthii	35.38	46.61	82.68	254	forward
CNT30335475	Camelina sativa	Cynara cardunculus	38.44	21.25	81.16	276	forward

Expression of CNT30311681

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLDCKMAKLDCKKERSDCMQVKSGYKQVMLGCKQAKSGYIQVK*

>peptide 2 (60 aa)
MKKVKRPFRQHMEKTVRLTLVTNAYLDSTGSSGTSCLHGKECLMLVIEQESFQIPDHPYS*

>peptide 3 (29 aa)
MLDCNLVKLGCSQVKWGCSQVKWGCMQVK*

Sequence

>CNT30311681
TGGAGATGTAGGACTGTAGGGACTAGATGGTGATAGTCTTGCATTGCTAGGAGAGTAAGCAAGAGATGGGCTATATTTAGCAGACTGAGGGTTGTAGCTT
GGAGACGTAGGACCATAGCTTGGTGATGTTGGACTGTAACTTGGTGAAGTTGGGCTGTAGCCAGGTGAAGTGGGGCTGTAGCCAGGTGAAGTGGGGCTGT
ATGCAGGTGAAGTAGGACTATAAGATGGTGATGTGGGACTATAGGATGGTGAGGTAGGGCTGTAAGAAGGCGATGTTGGACTGTAAGATGGCGAAGTTGG
ACTGTAAGAAGGAGAGGTCGGACTGTATGCAGGTGAAGTCGGGCTATAAGCAGGTGATGTTGGGCTGTAAGCAGGCGAAGTCGGGCTATATACAGGTGAA
GTAGGACTGTATCCAGACGGGCTATAGCCTGGAGATGAAGAAGGTGAAAAGGCCATTCCGCCAACATATGGAGAAAACTGTGCGTCTGACATTGGTGACA
AACGCATATTTGGACTCAACAGGTAGTTCGGGGACATCATGCCTTCATGGTAAGGAGTGCCTGATGTTGGTGATCGAGCAGGAGTCATTCCAAATTCCAG
ACCATCCATATAGCTAGGGAGCTGGAGTTCAATAGCATTCTTCAACATCTCATCATTCAGATACAGTTCACAATCTCCTGTTCCAATTGGTGCAAGTTGA
CCCAGCATTATATTCTCA