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Detailed information on CNT3040646


BLAST search results

BLAST vs Swiss-Prot:
sp|P33626|TBA4_MAIZE, E-value = 3e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678577Marchantia polymorphaSetaria viridis21.2919.1392.4266forward
CNT30522084Marchantia polymorphaSetaria italica21.2921.6493.9466forward
CNT30317463Marchantia polymorphaCorylus avellana22.2625.0991.369forward
CNT3099067Marchantia polymorphaSolanum tuberosum23.235.2690.2872reverse complement
CNT30562915Marchantia polymorphaActinidia chinensis31.6142.9888.7898forward
CNT30553219Marchantia polymorphaOryza glaberrima21.2932.0492.4266forward
CNT30136398Marchantia polymorphaLolium perenne22.5834.159070forward
CNT301559Marchantia polymorphaZea mays308.9988.1793forward
CNT30720027Marchantia polymorphaTriticum spelta21.2932.3590.9166forward
CNT30704384Marchantia polymorphaPrunus avium29.6816.5284.7892forward
CNT30579614Marchantia polymorphaEchinochloa crusgalli21.2916.7193.9466forward

Expression of CNT3040646

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MVKRTSRQVEQILRDKRVQRRLHEERSVHALRERSRIDATASESLTQK

>peptide 2 (54 aa)
EYRALDSTTPSTHFRPGYRPVQCGSRCTLSFSPGDLGVSGESKERRTVRIGGDR*

Sequence

>CNT3040646
CTGAATACCGTGCTCTAGACAGTACAACTCCCAGCACGCATTTCCGACCTGGATACCGGCCTGTCCAATGTGGATCGAGATGCACTCTCTCATTTTCGCC
GGGTGATTTGGGTGTTAGCGGAGAAAGCAAAGAACGGAGAACAGTCCGGATCGGAGGCGATCGCTGATGGTGAAAAGAACTTCGAGGCAAGTCGAACAAA
TTCTTCGAGACAAGCGTGTGCAAAGACGCCTTCACGAAGAACGGAGTGTCCACGCACTGCGAGAGAGATCAAGAATCGATGCAACGGCTAGCGAGAGCTT
AACTCAGAAA