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Detailed information on CNT30369756


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6VAG0|TBA2_GOSHI, E-value = 5e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Oryza glumipatulaCorylus avellana7.5926.4886.41103forward
CNT30547360Oryza glumipatulaIpomoea triloba6.3437.2394.1986forward
CNT30562915Oryza glumipatulaActinidia chinensis6.5639.0489.8989forward
CNT30553219Oryza glumipatulaOryza glaberrima6.4142.2310087forward
CNT3079816Oryza glumipatulaBrassica juncea8.742.9188.14118forward
CNT30229091Oryza glumipatulaAnanas comosus726.5485.2695forward
CNT30648424Oryza glumipatulaRosa chinensis7.4431.4693.07101forward
CNT30361585Oryza glumipatulaSorghum bicolor8.731.4791.53118forward
CNT30595858Oryza glumipatulaOryza meridionalis84.75103.3291.041150forward
CNT30100745Oryza glumipatulaOryza rufipogon73.9187.0798.91003forward
CNT30579614Oryza glumipatulaEchinochloa crusgalli8.428.8688.6114forward
CNT3065151Oryza glumipatulaSelaginella moellendorffii5.6737.3885.7177forward

Expression of CNT30369756

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFMTESTMISTFNSIPRSDPVFRTIISAKFTK*

>peptide 2 (31 aa)
YLRHKPVEVGVGWALNVKGAAADVIDGLIIK*

>peptide 3 (37 aa)
MLPSTSLTEEGVESIITSTNSPVTGHLTIGLKGQNTC*

>peptide 4 (35 aa)
MWIEMHSLMAADRGERGKEIKRGGAERGEYEDAFLC

>peptide 5 (49 aa)
MASLSSRTATSVCSRSTNTARGTCFPAPVSLKKVLKASSPPPTVLSLGI*

>peptide 6 (48 aa)
MGRGSVPGCHARGSRAPSTRSRPGYRPGRCGSRCTPSWRRIGERGERR*

>peptide 7 (72 aa)
MEDTRSFQNYHTCVEYLFHRSGKNRSDGQCHQTLDICICIRWVTCTNMTTRSRIRTRRALEMLSRSKYIGNK*

>peptide 8 (54 aa)
MLEAVELPARVPDLDTGLADVDRDALPHGGGSGREGKGDKARRRGERRVRRRLSL

Sequence

>CNT30369756
ATACCTGAGACACAAGCCTGTTGAGGTTGGTGTAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTATCAAGTAGAAC
AGCAACATCAGTGTGCTCAAGATCAACAAATACAGCACGGGGAACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCA
CCAACAGTCCTGTCACTGGGCATCTGACCATCGGCCTGAAAGGACAAAATACATGTTAGCGCCTTAGTGGTACATTATTATTTCAGTACAGCAAGATAAC
ACAATTCAAAAGACCTACCCATAATAAATAACTAGTCCTCAATTTAAAATTTGAGTTCCTAAATAGACATCTATGAATATGCTGTACATCGGCACTACAG
AAAATACGATTCCCAATAATTGAACAATTGTACTTTATTTAGTTGTTACTACAACAATGGAAGATACAAGATCGTTTCAAAACTACCATACATGCGTGGA
GTATTTGTTCCACAGATCTGGAAAAAACAGATCTGACGGGCAGTGTCACCAAACACTAGACATATGTATTTGTATTAGGTGGGTGACGTGTACAAACATG
ACTACCAGATCTAGAATTAGAACGCGGCGTGCTTTGGAAATGTTAAGTAGATCCAAATACATCGGTAACAAATGAACATATTCATATGACATAGCTGTAA
AACATCATGATCTATCATATCAACTAGAGGGGATCTCGGCATGTATCATTCTATTGCATCTAGAATCATAGCATTTCCATGTGACAAACAATTTTGAAAC
ATACATTGCTCAGATCTACCATAAGAACACCATGTTCATGACAGAATCGACCATGATTTCCACATTTAACAGCATCCCGAGGTCAGATCCAGTGTTTAGA
ACTATCATTTCAGCAAAATTCACAAAATAAATCCTCCAATTCGCCTACATATATCCATTCCACGCATCCTAGGACCAGATCCACCATACCAGTATACACG
AACACTAAACATTTCATCAGATCCGCTAACTACGACAGAGAAAACGCAGATCCAGACAACCAGATCCACCGATAAATAAACACAGCCCCCCACATCCAAC
AACCGCGAATCCACCCAGATCTGACCCAGAAGCAGGCACGAAGAACACGGGGGGTGAGGGAGATGGGACGCGGATCCGTACCTGGATGCCATGCTCGAGG
CAGTAGAGCTCCCAGCACGCGTTCCCGACCTGGATACCGGCCTGGCCGATGTGGATCGAGATGCACTCCCTCATGGCGGCGGATCGGGGAGAGAGGGGAA
AGGAGATAAAGCGCGGAGGCGCGGAGAGAGGCGAGTACGAAGACGCCTTTCTCTGCG