« Back to Saccharum spontaneum search


Detailed information on CNT30446069


BLAST search results

BLAST vs Swiss-Prot:
sp|P20364|TBB1_DAUCA, E-value = 3e-42

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677660Saccharum spontaneumSetaria viridis11.7759.7394.01267forward
CNT30522342Saccharum spontaneumSetaria italica22.486.3990.94508forward
CNT30317272Saccharum spontaneumCorylus avellana7.6744.7381.03174forward
CNT30555317Saccharum spontaneumOryza glaberrima5.1140.5682.76116forward
CNT30135921Saccharum spontaneumLolium perenne7.7646.8181.25176forward
CNT3016707Saccharum spontaneumZea mays17.3765.6794.92394forward
CNT30129276Saccharum spontaneumCorymbia citriodora5.1627.9983.76117forward
CNT30719750Saccharum spontaneumTriticum spelta5.1148.7483.62116forward
CNT30344814Saccharum spontaneumEragrostis tef9.5754.5286.18217forward
CNT30361871Saccharum spontaneumSorghum bicolor23.531.2298.12533forward
CNT30358630Saccharum spontaneumLactuca sativa10.3259.6981.2234forward
CNT30579614Saccharum spontaneumEchinochloa crusgalli7.8945.3282.68179forward

Expression of CNT30446069

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MSCSGWKSWRYAPVFTSSITVGSKSTNKALGTCFPALVSLKNVLNASLAIPREVSLQANSQG*

>peptide 2 (63 aa)
MEKLAVRPGLHLVNHSGLQVDKQGPWNVLPCARFTEERVECIPRNPERGVTASEQPRLRNWML*

>peptide 3 (31 aa)
MYLPCLGSHFAITLDGSNTEFVISGTECCSW*

>peptide 4 (31 aa)
MSHALSSLQKKMSFFNMQGVFYPIMSLFNFL*

>peptide 5 (41 aa)
MRSNLRSIREKTSATAVLLLIMQTARCTLARSPPGTTVGGW*

>peptide 6 (34 aa)
MDSSIHIFWHNIAAVHQTACHVLTMPGITFCHHT*

>peptide 7 (28 aa)
MDCATLHTSDGKRPGRTKITRWNCEQQLL

>peptide 8 (31 aa)
MDEINRKCGNWNGKGPHLGMRPSGWIPCSRQ*

>peptide 9 (30 aa)
TFLRLILFDLKPSYQFNQSSHFYSGNHEQV*

>peptide 10 (78 aa)
MDADDLPHLPPVLTLSRSASESGLHTEERRAAGVEGKERGQGSVAASTGTFFGKQTATDGLRYTTHVGRKATRTDKNH*

>peptide 11 (85 aa)
MNERTLRIHEIKFAINTGEDLSHSCVVADHADCSLHLGQVPSRDYSWWLVVYPTLEASRAPVHEATEKDVHVSCSYIFARRQSMI*

Sequence

>CNT30446069
GACATTTTTAAGACTTATTTTATTTGATCTCAAACCATCATACCAGTTCAACCAATCTTCACACTTCTACTCTGGCAATCATGAACAGGTGTAATGCAAT
AGCAAACAGGGAAAGAAATGGGAGGTACAACCATGCAACCCAAGCACTCCTGGTTGACTGATACCAAAGGAAAATAACCATGCATCCAGATGGGATGACT
CAATACTCAGCTTCCTCCTCATCGTCTTCAACTTCTGCTCCGACTTCCTCATAATCCTTCTCCAGTGCCGCAAGATCCTCCCTTGCCTCTGAGAACTCCC
CTTCTTCCATCCCTTCACCGACATACCAATGAACGAACGCACGCTTCGCATACATGAGATCAAATTTGCGATCAATACGGGAGAAGACCTCAGCCACAGC
TGTGTTGTTGCTGATCATGCAGACTGCTCGTTGCACCTTGGCCAGGTCCCCTCCAGGGACTACAGTTGGTGGTTGGTAGTTTATCCCACACTTGAAGCCA
GTAGGGCACCTGTGCATGAGGCAACAGAGAAAGATGTTCATGTCTCGTGCAGCTACATTTTCGCTAGAAGACAGTCTATGATCTAATATAACTTGGTAAG
AGTTGTGAGCATATACCAGTCAACAAACTGCACTGCTCTCTTGGTCTTGATTGAATGGACAGCAGCATTCACATCTTTTGGCACAACATCGCCGCGGTAC
ATCAAACAGCATGCCATGTACTTACCATGCCTGGGATCACATTTTGCCATCACACTTGATGGCTCAAACACAGAATTTGTGATCTCAGGAACAGAGTGTT
GTTCATGGTAGGCCTTCTCCACTGAGATAATTGGAGCATATGAAGAGAGCATGAAGTGTATCCGGGGATAAGGCACAAGGTTGGTCTGGAACTCAGTTAT
GTCAACATTAATGGCTCCGTCAAACCTCAGCGATGTGGTCAGAGATGATATAACTTGAGATATAAGCCTGTTCAGATTGGTGTATGTTGGACGCTCAATG
TCAAGGGACCTCTTGCATATGTCATAGATAGCTTCATTGTCAAGAAGCACAACAACATCGGTGTGTTCAATCAGGGAATGTGTGGAGAGCACGCTGTTAT
AAGGCTCGACCACAGCAGTTGAGATCTGCAACAGGAAATGGTTTCAGTACAGAGTTCTTATAAGTTACAATGACAGGAAATGGCTCAGGGTGAGGGACAA
CATGTCACACCTGTGTAATGTCCACGGGCAAAGTTGTTTGCAGCATCTTCCTTGTGTGAGATGAGCTGCTCAGGATGGAAAAGCTGGCGGTACGCCCCGG
TCTTCACCTCGTCAATCACAGTGGGCTCCAAGTCGACAAACAAGGCCCTTGGAACGTGCTTCCCTGCGCTCGTTTCACTGAAGAACGTGTTGAATGCATC
CCTCGCAATCCCGAGAGAGGTGTCACTGCAAGCGAACAGCCAAGGTTGAGAAATTGGATGCTGTAAAATAGGTGAGTTTGACACAGAAATCGGTAGCATG
TCACATGCTTTATCCTCGCTTCAGAAAAAGATGAGCTTCTTTAATATGCAGGGGGTTTTCTATCCGATCATGTCCCTTTTTAACTTTTTATAAGCAAGTG
GTTTTGAACGCAGGGGTGTCATCAACTCGTAAGAAAATATTTTTAGAGGTCAGAGCTTCCAACAAAATTTCTCTAGCTTTTACATCGGGCTGTTATCCAC
GAGCAAAGATTGTCCTCAGGATTATGAATATTCCAGGATTATCTCCAAAAAATACAACCTTTTTGAGTCTGCTGCTACAAGAACCCAGAAGGCAACCCGA
TCTGAAATAATTATCTGAGCTAGAATCATCTCAAATAGATCAAAAATCGACAGAACTCTGAAGGATGGATGAGATAAACAGAAAGTGTGGAAATTGGAAC
GGAAAAGGACCTCACCTGGGCATGAGGCCATCAGGCTGGATACCGTGCTCGAGGCAGTAGAGCTCCCAGCAAGAATTCCCTACCTGGATGCCCGCCTGCC
CGATATGGATGCTGATGATCTCCCTCATCTCCCTCCTGTCCTGACGCTCTCTCGCTCTGCCTCTGAATCAGGTCTGCACACGGAAGAAAGGCGTGCGGCA
GGGGTAGAAGGGAAGGAAAGAGGACAAGGCAGCGTAGCGGCGTCAACGGGAACGTTCTTCGGAAAGCAGACAGCGACCGATGGATTGCGCTACACTACAC
ACGTCGGACGGAAAGCGACCCGGACGGACAAAAATCACTAGGTGGAACTGTGAACAACAACTGCTGCG