Detailed information on CNT3065


BLAST search results

BLAST vs Swiss-Prot:
sp|P33628|TBA_PICAB, E-value = 2e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Zea maysCorylus avellana71.3144.7386.21174forward
CNT30372848Zea maysArabidopsis thaliana56.1522.8389.05137forward
CNT30383102Zea maysTriticum turgidum72.5460.4190.4177forward
CNT30562914Zea maysActinidia chinensis81.9765.7981200forward
CNT30555317Zea maysOryza glaberrima42.2136.0196.12103forward
CNT3079816Zea maysBrassica juncea47.5442.1887.93116forward
CNT30135921Zea maysLolium perenne82.7953.7293.07202forward
CNT3041114Zea maysChlamydomonas reinhardtii37.312.9484.6291forward
CNT30609153Zea maysGossypium raimondii68.4441.2386.23167forward
CNT30648424Zea maysRosa chinensis84.4364.1787.86206forward
CNT30129276Zea maysCorymbia citriodora74.5943.5489.01182forward
CNT30716299Zea maysMalus domestica golden88.5235.5888.89216forward
CNT30719750Zea maysTriticum spelta95.0897.4890.52232forward
CNT30595858Zea maysOryza meridionalis50.8211.1491.13124forward
CNT30359416Zea maysLactuca sativa75.8225.8781.08185forward
CNT30579614Zea maysEchinochloa crusgalli88.9354.9495.85217forward

Expression of CNT3065

Peptides detected in this lncRNA

>peptide 1 (80 aa)
GVVTTGKVVGCILLPTDELLRVEELAVGASPHLIDDSWFKVNKNSTRDVLPSTSLTEEGVESIITTPNGLVTGHLTIGLNK

>peptide 2 (40 aa)
MTVGSRSTKTARGTCFPAPVSLKKVLKASSPPPMVLSPGI*

Sequence

>CNT3065
TGGTGTAGTGACCACGGGCAAAGTTGTTGGCTGCATCCTCCTTCCCACTGATGAGCTGCTCAGGGTGGAAGAGCTGGCGGTAGGTGCCAGTCCTCACCTC
ATCGATGACAGTTGGTTCAAGGTCAACAAAAACAGCACGAGGGACGTGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCACCC
CCAATGGTCTTGTCACCGGGCATCTGACCATCGGCCTGAACAAA