Detailed information on CNT30493173


BLAST search results

BLAST vs Swiss-Prot:
sp|P33627|TBA6_MAIZE, E-value = 3e-39

BLAST vs NONCODE:
NONATHT003369, E-value = 4e-22

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522084Olea europaeaSetaria italica23.7332.1383.6798forward
CNT30317463Olea europaeaCorylus avellana15.0122.5587.162forward
CNT30383102Olea europaeaTriticum turgidum32.9346.4283.82136forward
CNT30611949Olea europaeaArabis alpina18.8922.5484.6278forward
CNT30135921Olea europaeaLolium perenne34.3837.7783.1142forward
CNT309322Olea europaeaZea mays40.6862.9280.36168forward
CNT30609153Olea europaeaGossypium raimondii26.6327.1681.82110forward
CNT30716286Olea europaeaMalus domestica golden39.4712.4884.05163forward
CNT30719750Olea europaeaTriticum spelta32.9357.1483.82136forward
CNT30579614Olea europaeaEchinochloa crusgalli34.3835.9580.99142forward

Expression of CNT30493173

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MKKCIKILCNPLHFTLFLILRYKINYSIFKGES*

>peptide 2 (64 aa)
SGEIISSIFLSRYELLWVEKLAISSCPHFVNHSRFKINEYSPGYMLPRPCLAKEGVECIMCITH*

Sequence

>CNT30493173
CCTCTGGCGAAATTATTAGCAGCATCTTCCTTTCCAGATATGAGTTGCTCTGGGTGGAAAAGCTGGCGATAAGTTCCTGTCCTCACTTCGTCAATCACAG
TCGGTTCAAGATCAACGAATATAGCCCTGGGTACATGCTTCCCAGACCCTGTCTCGCTAAAGAAGGTGTTGAATGCATCATGTGCATAACCCACTGATGT
GTCACTGCAAGCCCGATGAAAAAATGTATTAAAATCCTGTGCAATCCATTACATTTCACCCTTTTTTTAATTCTAAGATACAAAATCAATTACTCAATCT
TCAAAGGGGAATCGTAATTCATTAACTGCCGATAAAATGATAAACAATTTCAATTTATTCATCAGATAACTTCAACAATTCAAAAATAATTTTTGACGAC
ATTCATGTTATAC