Detailed information on CNT30440804


BLAST search results

BLAST vs Swiss-Prot:
sp|P33626|TBA4_MAIZE, E-value = 2e-17

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522084Aegilops tauschiiSetaria italica23.916.0789.849reverse complement
CNT30709004Aegilops tauschiiGlycine max22.9317.4789.3647reverse complement
CNT30301189Aegilops tauschiiTriticum aestivum50.7312.795.19104forward
CNT30562915Aegilops tauschiiActinidia chinensis27.3224.5687.556reverse complement
CNT30553219Aegilops tauschiiOryza glaberrima21.4621.3690.9144reverse complement
CNT30136398Aegilops tauschiiLolium perenne23.923.997.9649reverse complement
CNT301559Aegilops tauschiiZea mays28.785.791.5359reverse complement
CNT3041226Aegilops tauschiiChlamydomonas reinhardtii28.2911.7493.158reverse complement
CNT30704384Aegilops tauschiiPrunus avium28.7810.5989.8359reverse complement
CNT30579614Aegilops tauschiiEchinochloa crusgalli20.9810.8990.743reverse complement

Expression of CNT30440804

Peptides detected in this lncRNA

>peptide 1 (42 aa)
GKPASRSATRAGNFTASSTASSLMARRTVTRPSGDSLLANNS*

>peptide 2 (34 aa)
GQAGIQVGNACWELYCLEHGIQPDGQTNGDKTIR*

Sequence

>CNT30440804
GGGCAAGCCGGCATCCAGGTCGGCAACGCGTGCTGGGAACTTTACTGCCTCGAGCACGGCATCCAGCCTGATGGCCAGACGAACGGTGACAAGACCATCC
GGTGATTCGCTGCTTGCAAACAACAGCTAGTAAATCGATCACCGTGGGGGCGGGGACATGAGATTCAGAGAAGAGATGCTGCTGCCTGCCTATACTAGTT
CATAT