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Detailed information on CNT30595858


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Oryza meridionalisCorylus avellana9.2526.4886.41103forward
CNT3079816Oryza meridionalisBrassica juncea10.642.9187.29118forward
CNT30135921Oryza meridionalisLolium perenne8.7225.892.7897forward
CNT3065Oryza meridionalisZea mays11.1450.8291.13124forward
CNT30648424Oryza meridionalisRosa chinensis9.0731.4694.06101forward
CNT30361585Oryza meridionalisSorghum bicolor10.631.4792.37118forward
CNT30369756Oryza meridionalisOryza glumipatula103.3284.7591.041150forward
CNT3024647Oryza meridionalisPopulus trichocarpa10.622.7887.29118forward
CNT30100745Oryza meridionalisOryza rufipogon90.5787.589.681008forward
CNT30579614Oryza meridionalisEchinochloa crusgalli10.2428.8689.47114forward

Expression of CNT30595858

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MASLSSRTATSVCSRSTNTARGTCFPAPVSLKKVLKASSPPPTVLSLGICPSA*

>peptide 2 (37 aa)
MIYYTNWRGSQHVSSYASRIIAFRCHTNDFETYIAQG*

>peptide 3 (84 aa)
LRHKPVEVCVGWALNVKGAAADVIDGLIIKQNSNISVLKINKYSTGNMLPSTSLTEEGVESIITSTNGPVTGHLSIGLKGQNTC*

>peptide 4 (34 aa)
MTIQYSKLTQFKRPIHKQLVLNLKFVFVNRQHYR*

>peptide 5 (32 aa)
MFMTETTMISTSNSIPRSDPVFRTIIPAKFTK*

Sequence

>CNT30595858
CTGAGACACAAGCCTGTTGAGGTTTGTGTAGGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTATCAAGCAGAACAGCA
ACATCAGTGTGCTCAAGATCAACAAATACAGCACGGGGAACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACCTCCACCAA
CGGTCCTGTCACTGGGCATCTGTCCATCGGCCTGAAAGGACAAAATACATGTTAGCGCCTTAGTGGTACATGACTATTCAGTACAGCAAGTTAACACAAT
TCAAAAGACCGATCCATAAACAACTAGTCCTTAATTTAAAATTTGTGTTCGTAAATAGACAGCACTACAGATAATACGATTCCCAATAATTGAACAATTG
TACTTTATTTTGTTGTTACTACAACAACCGAAGATACAAGATCGTTTCAAAACTACCATACACGCGTGGAGTATTTGTTCCACAGATCTAGAACAAACAG
ATCTGACGAGCAGCGTCACCAAACACTAAGACATGTATTTGTACTAGGTGTGTGACGTGTACAAACATAACCACCAGATCTAGACTTAGAACGCGGCGTG
CTTTGGAAATGTTGAGCAGATCCAAATACATGGGTAACAAATGAATATATTCATATGAGATGGCTGTAAAAGATCATGATCTATTATACCAACTGGAGGG
GATCTCAGCATGTATCATCCTATGCATCTAGAATCATAGCATTTCGATGTCACACAAACGATTTTGAAACATACATTGCTCAGGGTTGATCTACCACTAG
AACATGTTCATGACAGAAACGACCATGATTTCCACATCAAACAGCATCCCGCGGTCAGATCCAGTGTTTAGAACTATCATTCCAGCAAAATTCACAAAAT
AAAACCTCCAATTCGCCTACATATATCCATTCCACGCATCCTAGAACCAGATCCACCATACCAGTATACATAAACATTTCATCAGATCCACTACCTACGA
CAGAGAAAACGCAGATCCAGACAACCAGATCCACCGACAAATCAACACAGCCCCCACATCCAACAACCGCGAATCCACCCAGATCTGACCCAGAAGCAGG
CACGAAGAACAAG