Detailed information on CNT30104286


BLAST search results

BLAST vs Swiss-Prot:
sp|Q38771|TBA_AVESA, E-value = 1e-22

BLAST vs NONCODE:
NONGMAT000220, E-value = 7e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678671Oryza rufipogonSetaria viridis32.5926.8892.66218forward
CNT30562914Oryza rufipogonActinidia chinensis17.4938.4982.05117forward
CNT3079816Oryza rufipogonBrassica juncea37.9792.3687.4254forward
CNT30716286Oryza rufipogonMalus domestica golden20.6310.5786.23138forward
CNT30361585Oryza rufipogonSorghum bicolor15.427.4796.12103forward
CNT30579614Oryza rufipogonEchinochloa crusgalli16.2927.5990.83109forward

Expression of CNT30104286

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLPSTSLTEEGVKSIITSPNGLVTGHLSIR

>peptide 2 (65 aa)
MASLSSRTATSVCSRREWVERTLLYGSRSTKTARGTCFPAPVSLKKVLKASSPPPTVLSPGICPSG

>peptide 3 (73 aa)
DFNAIDTTLRSRGFVLRQTTNLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

Sequence

>CNT30104286
GATTTCAATGCTATAGACACAACTTTACGAAGTAGAGGCTTCGTTTTACGACAAACCACGAACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAA
ACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATCGAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCC
ACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCG
TCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTCGCGGGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCGCCGACGTACCAGTGGACGAAGG
CGCGCTTGGAGTACATGAGGTTGGTGTAGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCGAGCAGGACAGCGAC
ATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAAGATCGACGAAGACAGCACGGGGGACATGCTTCCCAGCACCAGTCTCA
CTGAAGAAGGTGTTAAAAGCATCATCACCTCCCCCAACGGTCTTGTCACCGGGCATCTGTCCATCAGGC