Detailed information on CNT30709004


BLAST search results

BLAST vs Swiss-Prot:
sp|Q56WH1|TBA3_ARATH, E-value = 2e-28

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522084Glycine maxSetaria italica24.1621.3187.6965forward
CNT30317463Glycine maxCorylus avellana23.0522.5588.7162forward
CNT30300679Glycine maxTriticum aestivum39.7849.3185.98107forward
CNT30562915Glycine maxActinidia chinensis22.6826.7593.4461forward
CNT30553219Glycine maxOryza glaberrima20.8227.1887.556forward
CNT30440804Glycine maxAegilops tauschii17.4722.9389.3647reverse complement
CNT30136398Glycine maxLolium perenne20.4526.8387.2755forward
CNT30129276Glycine maxCorymbia citriodora37.5524.1685.15101forward
CNT30579614Glycine maxEchinochloa crusgalli20.4513.9289.0955forward

Expression of CNT30709004

Peptides detected in this lncRNA

>peptide 1 (88 aa)
AGEVVGGVFLAGDELFGVEELTVGAAADLVDDGGFEAVEFPAGVSDLDPGLTYVNADDFSHFSEIRLRFAKRLSLSHSLSHSLSHSQVL

Sequence

>CNT30709004
GCGGGCGAAGTTGTTGGCGGCGTCTTCCTTGCCGGAGATGAGTTGTTCGGGGTGGAAGAGTTGACGGTAGGTGCCGCAGCGGACCTCGTCGATGACGGTG
GGTTCGAGGCAGTAGAGTTCCCAGCAGGAGTTTCCGACCTGGATCCCGGCCTGACCTATGTGAATGCTGATGATTTCTCTCATTTTTCTGAGATTCGATT
GAGATTTGCGAAGCGTCTCTCTCTATCTCACTCACTCTCTCACTCTCTCTCTCACTCTCAAGTCTTAAC