Detailed information on CNT30555317


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522084Oryza glaberrimaSetaria italica68.1863.9388.72195forward
CNT30300679Oryza glaberrimaTriticum aestivum44.0658.0688.1126forward
CNT30383102Oryza glaberrimaTriticum turgidum28.6727.9991.4682forward
CNT30446069Oryza glaberrimaSaccharum spontaneum40.565.1182.76116forward
CNT30135921Oryza glaberrimaLolium perenne47.235.991.11135forward
CNT3065Oryza glaberrimaZea mays36.0142.2196.12103forward
CNT30609153Oryza glaberrimaGossypium raimondii35.3124.9486.14101forward
CNT30648424Oryza glaberrimaRosa chinensis37.4133.3387.85107forward
CNT30129276Oryza glaberrimaCorymbia citriodora46.8532.0687.31134forward
CNT30624589Oryza glaberrimaDaucus carota26.5715.3285.5376forward
CNT30719750Oryza glaberrimaTriticum spelta47.957.5691.97137forward
CNT30361871Oryza glaberrimaSorghum bicolor40.566.881.9116forward
CNT30619808Oryza glaberrimaCajanus cajan29.3714.1294.0584forward
CNT30579614Oryza glaberrimaEchinochloa crusgalli40.5629.3793.1116forward
CNT30496537Oryza glaberrimaDigitaria exilis45.4557.5285.38130forward

Expression of CNT30555317

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MWIEMHSLMAAAVAAETNGGEYEDAFLCGVVGFP

>peptide 2 (91 aa)
GVVTTGKVVGCILLATDELLRVEELAVVTSPHLINHGRLKIDEDSSRAPSTRSRPGYRPARCGSRCTPSWRRRWRRRRTAASTKTPFSAVW*

Sequence

>CNT30555317
CTGGTGTAGTGACCACGGGCAAAGTTGTTGGCTGCATCCTCCTTGCCACTGATGAGCTGCTCAGGGTGGAAGAGCTGGCGGTAGTCACCAGTCCTCACCT
CATCAATCACGGTAGGCTCAAGATCGACGAAGACAGCAGTAGAGCTCCCAGCACGCGTTCCCGACCTGGATACCGGCCTGCCCGATGTGGATCGAGATGC
ACTCCCTCATGGCGGCGGCGGTGGCGGCGGAGACGAACGGCGGCGAGTACGAAGACGCCTTTCTCTGCGGTGTGGTAGGGTTTCCA