Detailed information on CNT30522084


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30317272Setaria italicaCorylus avellana24.9219.5489.4776forward
CNT30493173Setaria italicaOlea europaea32.1323.7383.6798forward
CNT30709004Setaria italicaGlycine max21.3124.1687.6965forward
CNT3099067Setaria italicaSolanum tuberosum26.235.8486.2580reverse complement
CNT30300679Setaria italicaTriticum aestivum20.3328.5791.9462forward
CNT30562915Setaria italicaActinidia chinensis24.2632.4693.2474forward
CNT30555317Setaria italicaOryza glaberrima63.9368.1888.72195forward
CNT30440804Setaria italicaAegilops tauschii16.0723.989.849reverse complement
CNT30135921Setaria italicaLolium perenne33.4427.1396.08102forward
CNT301559Setaria italicaZea mays31.159.1896.8495forward
CNT30609153Setaria italicaGossypium raimondii30.1622.7289.1392forward
CNT30129276Setaria italicaCorymbia citriodora33.1124.1689.11101forward
CNT30624589Setaria italicaDaucus carota24.5915.1285.3375forward
CNT30719750Setaria italicaTriticum spelta32.1341.1893.8898forward
CNT30704384Setaria italicaPrunus avium26.8914.7287.882forward
CNT30579614Setaria italicaEchinochloa crusgalli31.4824.310096forward
CNT30496537Setaria italicaDigitaria exilis34.7546.984.91106forward
CNT3040646Setaria italicaMarchantia polymorpha21.6421.2993.9466forward

Expression of CNT30522084

Peptides detected in this lncRNA

>peptide 1 (75 aa)
GKVIGSILLATDELLRVEELAVSTSPHLINHSGLKAVELPARVSDLDTGLADVDRDALPHGVVGRVVRRRRRRRR*

>peptide 2 (49 aa)
MWIEMHSLMVSSEGWCGGDGGGGGREWEDGESFESRERRVRRRLPLRCSA

Sequence

>CNT30522084
GGCAAAGTTATTGGCAGCATCCTCCTTGCCACTGATGAGCTGCTCAGGGTGGAAGAGCTGGCGGTAAGTACCAGTCCTCACCTCATCAATCACAGTGGGC
TCAAGGCAGTAGAGCTCCCAGCACGCGTTTCCGACCTGGATACCGGCCTGGCCGATGTGGATCGAGATGCACTCCCTCATGGTGTCGTCGGAAGGGTGGT
GCGGCGGCGACGGCGGCGGCGGCGGTAGGGAATGGGAGGACGGGGAAAGCTTTGAGTCGCGAGAGAGGCGAGTACGAAGACGCCTTCCTCTGCGGTGCTC
GGCTT