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Detailed information on CNT30535409

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30315642	Eucalyptus grandis	Corylus avellana	55.4	32.99	85.53	159	reverse complement
CNT30547454	Eucalyptus grandis	Ipomoea triloba	28.22	24.7	91.36	81	reverse complement
CNT30515285	Eucalyptus grandis	Juglans regia	54.36	20.61	87.18	156	reverse complement
CNT30703316	Eucalyptus grandis	Quercus lobata	53.66	50.16	84.42	154	reverse complement
CNT30373911	Eucalyptus grandis	Arabidopsis thaliana	52.96	50.84	81.58	152	forward
CNT30501219	Eucalyptus grandis	Coffea canephora	31.01	28.08	89.89	89	forward
CNT30618136	Eucalyptus grandis	Sesamum indicum	28.57	14.41	90.24	82	forward
CNT30272829	Eucalyptus grandis	Chenopodium quinoa	28.57	26.71	92.68	82	reverse complement
CNT30727469	Eucalyptus grandis	Corchorus capsularis	55.4	52.3	87.42	159	reverse complement
CNT3069056	Eucalyptus grandis	Quercus suber	25.44	6.91	91.78	73	reverse complement
CNT30382472	Eucalyptus grandis	Manihot esculenta	28.22	26.56	90.12	81	reverse complement
CNT30404033	Eucalyptus grandis	Beta vulgaris	29.27	27.18	90.48	84	reverse complement
CNT30526259	Eucalyptus grandis	Phaseolus vulgaris	29.97	28.2	90.7	86	reverse complement
CNT30629861	Eucalyptus grandis	Vigna unguiculata	27.87	16.88	92.5	80	reverse complement
CNT30507384	Eucalyptus grandis	Nicotiana attenuata	24.04	22.62	92.75	69	reverse complement
CNT30711674	Eucalyptus grandis	Glycine max	25.44	24.01	91.78	73	reverse complement
CNT3044357	Eucalyptus grandis	Prunus dulcis	43.21	40.79	87.9	124	reverse complement
CNT30158859	Eucalyptus grandis	Pistacia vera	29.27	29.27	91.67	84	forward
CNT3095958	Eucalyptus grandis	Solanum tuberosum	31.36	29.7	86.67	90	reverse complement
CNT30561829	Eucalyptus grandis	Actinidia chinensis	31.01	24.93	89.89	89	reverse complement
CNT30587521	Eucalyptus grandis	Musa acuminata	31.01	27.22	88.76	89	reverse complement
CNT3086859	Eucalyptus grandis	Vigna radiata	27.87	26.49	92.5	80	reverse complement
CNT30544072	Eucalyptus grandis	Brassica napus	28.22	26.82	90.12	81	reverse complement
CNT30235726	Eucalyptus grandis	Brassica oleracea	36.93	34.64	84.91	106	reverse complement
CNT30662869	Eucalyptus grandis	Triticum dicoccoides	22.65	21.45	90.77	65	reverse complement
CNT3061108	Eucalyptus grandis	Arabidopsis lyrata	23	28.82	90.91	66	forward
CNT3081558	Eucalyptus grandis	Brassica juncea	28.22	10.11	87.65	81	forward
CNT30264180	Eucalyptus grandis	Brassica rapa	28.22	26.82	90.12	81	reverse complement
CNT30612441	Eucalyptus grandis	Arabis alpina	52.26	48.7	82	150	forward
CNT30653438	Eucalyptus grandis	Rosa chinensis	30.66	28.57	90.91	88	reverse complement
CNT30213301	Eucalyptus grandis	Helianthus annuus	42.16	39.41	85.12	121	reverse complement
CNT30128358	Eucalyptus grandis	Corymbia citriodora	55.05	57.25	87.34	158	forward
CNT30719063	Eucalyptus grandis	Malus domestica golden	55.05	20.65	83.54	158	reverse complement
CNT30479039	Eucalyptus grandis	Arabidopsis halleri	49.48	46.41	83.1	142	reverse complement
CNT30154558	Eucalyptus grandis	Prunus persica	31.36	29.41	88.89	90	reverse complement
CNT30408305	Eucalyptus grandis	Papaver somniferum	23.34	23.18	89.55	67	forward
CNT30572433	Eucalyptus grandis	Vitis vinifera	27.87	14.52	88.75	80	forward
CNT30704539	Eucalyptus grandis	Prunus avium	55.05	14.74	82.91	158	forward
CNT30644781	Eucalyptus grandis	Cannabis sativa	24.04	29.61	97.1	69	forward
CNT3030049	Eucalyptus grandis	Theobroma cacao	29.62	27.69	90.59	85	reverse complement
CNT3058749	Eucalyptus grandis	Amborella trichopoda	19.51	20.51	92.86	56	reverse complement
CNT3024632	Eucalyptus grandis	Populus trichocarpa	51.57	48.84	86.49	148	reverse complement
CNT30318775	Eucalyptus grandis	Asparagus officinalis	25.09	14.78	90.28	72	forward
CNT30120686	Eucalyptus grandis	Citrus clementina	30.31	28.9	90.8	87	forward
CNT30175002	Eucalyptus grandis	Vigna angularis	27.87	26.76	92.5	80	reverse complement

Expression of CNT30535409

Peptides detected in this lncRNA

>peptide 1 (33 aa)
WSSRTRPVGPQRVLIGTGPLSFHCREREVFAAL*

>peptide 2 (39 aa)
MNQLSAWNGRARKKPLQTRPNGFEPTSHHLDAPARVTSSR

Sequence

>CNT30535409
GTGGTCCAGTAGGACTCGGCCCGTTGGACCACAGCGGGTGCTGATCGGCACCGGCCCGTTATCCTTCCACTGCCGGGAGCGGGAGGTTTTCGCTGCTCTG
TGAAACCAGCCTCACGTGGTGCCCTCCACTTTAGGACACACGTGGCCCGAGCCTTCGCCCGAACCACATGAATCAGCTCTCGGCTTGGAACGGGCGGGCC
AGAAAGAAGCCTCTGCAGACCCGGCCCAATGGATTCGAGCCCACGTCCCACCACCTTGATGCCCCCGCTCGGGTCACAAGCTCTCGC