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Detailed information on CNT3030049


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Theobroma cacaoEucalyptus grandis27.6929.6290.5985reverse complement
CNT30547454Theobroma cacaoIpomoea triloba26.3824.788.8981forward
CNT30515285Theobroma cacaoJuglans regia27.6911.2389.4185forward
CNT30499557Theobroma cacaoCoffea canephora25.0825.0889.6177reverse complement
CNT30618209Theobroma cacaoSesamum indicum29.6414.4989.0191reverse complement
CNT30272829Theobroma cacaoChenopodium quinoa23.7823.7891.7873forward
CNT30379461Theobroma cacaoManihot esculenta25.0825.3390.9177forward
CNT30200216Theobroma cacaoPisum sativum21.522.2287.8866forward
CNT30711674Theobroma cacaoGlycine max25.4125.6689.7478forward
CNT3044614Theobroma cacaoPrunus dulcis29.6424.290.1191forward
CNT30158859Theobroma cacaoPistacia vera27.6929.6294.1285reverse complement
CNT3096457Theobroma cacaoSolanum tuberosum23.4523.6188.8972forward
CNT30591720Theobroma cacaoMusa acuminata25.7324.7691.1479forward
CNT3084371Theobroma cacaoVigna radiata24.116.2389.1974reverse complement
CNT30235645Theobroma cacaoBrassica oleracea23.7823.7887.6773forward
CNT30509042Theobroma cacaoSolanum lycopersicum27.3627.4585.7184forward
CNT30172221Theobroma cacaoTrifolium pratense24.4328.38875forward
CNT30146769Theobroma cacaoMedicago truncatula20.8521.0589.0664forward
CNT30612441Theobroma cacaoArabis alpina25.7325.6587.3479reverse complement
CNT30128358Theobroma cacaoCorymbia citriodora27.6930.890.5985reverse complement
CNT30718122Theobroma cacaoMalus domestica golden30.9430.7488.4295forward
CNT30625980Theobroma cacaoDaucus carota24.124.2687.8474forward
CNT30154450Theobroma cacaoPrunus persica30.9431.1588.4295forward
CNT30408305Theobroma cacaoPapaver somniferum21.8223.1889.5567reverse complement
CNT30704539Theobroma cacaoPrunus avium31.278.9689.5896reverse complement
CNT30644675Theobroma cacaoCannabis sativa27.3621.1694.0584reverse complement
CNT3053266Theobroma cacaoAmborella trichopoda24.4324.3589.3375forward
CNT3026903Theobroma cacaoPopulus trichocarpa23.1323.3692.9671forward
CNT30318775Theobroma cacaoAsparagus officinalis21.1713.3589.2365reverse complement
CNT30121042Theobroma cacaoCitrus clementina23.7824.2591.7873reverse complement
CNT30175002Theobroma cacaoVigna angularis25.4126.0989.7478forward
CNT30723384Theobroma cacaoLupinus angustifolius20.8521.0593.7564forward

Expression of CNT3030049

Peptides detected in this lncRNA

>peptide 1 (37 aa)
PSLVTQACDPRGGMIVLERWLSLSSWILGGRHLACPF*

Sequence

>CNT3030049
GCCGAGCTTGGTAACGCAAGCTTGTGACCCAAGGGGGGGCATGATAGTGTTGGAACGTTGGCTCAGCTTATCGAGTTGGATCCTTGGTGGTCGACATCTG
GCCTGTCCATTCTAAGCAAGGAGTTGAACCACGGGACTTGTAGCTAAAGCTCTGGGTCTCGTGGCTCTAGGAGTGGAGGGTACCGCGTGAGGCTGGCTTC
ACAGAGCAGCGAAGACTTCCCGCTCTTGGCAGTGGAAGGATAACAGGCCGGTGCCGCTTGGATCCGATATGGCTCAGTGGGCTGATCGTAACTGGACCAT
CACCTAC