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Detailed information on CNT30561829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Actinidia chinensisOryza sativa27.7330.7585.8699reverse complement
CNT30535409Actinidia chinensisEucalyptus grandis24.9331.0189.8989reverse complement
CNT30316252Actinidia chinensisCorylus avellana28.8529.188.35103reverse complement
CNT30515285Actinidia chinensisJuglans regia30.8114.5387.27110forward
CNT30703316Actinidia chinensisQuercus lobata28.5733.2292.16102forward
CNT30501219Actinidia chinensisCoffea canephora25.2128.399090reverse complement
CNT30616204Actinidia chinensisSesamum indicum21.0117.9990.6775forward
CNT30272829Actinidia chinensisChenopodium quinoa23.2527.0489.1683forward
CNT30727469Actinidia chinensisCorchorus capsularis28.5733.5590.2102forward
CNT30406606Actinidia chinensisBeta vulgaris24.6528.4888.6488forward
CNT30629861Actinidia chinensisVigna unguiculata23.8117.9387.0685forward
CNT30506770Actinidia chinensisNicotiana attenuata20.1723.6190.2872forward
CNT30711674Actinidia chinensisGlycine max26.8931.5886.4696forward
CNT3045640Actinidia chinensisPrunus dulcis29.1333.7786.54104forward
CNT30294286Actinidia chinensisTriticum aestivum20.1723.7691.6772forward
CNT30587521Actinidia chinensisMusa acuminata24.9327.2288.7689forward
CNT3086859Actinidia chinensisVigna radiata26.8931.7988.5496forward
CNT30544072Actinidia chinensisBrassica napus23.5327.8191.6784forward
CNT30238127Actinidia chinensisBrassica oleracea22.9726.8991.4682forward
CNT30437909Actinidia chinensisAegilops tauschii18.4921.8592.4266forward
CNT30660405Actinidia chinensisTriticum dicoccoides20.1723.7690.2872forward
CNT30313675Actinidia chinensisCamelina sativa18.7722.6492.5467reverse complement
CNT3059454Actinidia chinensisArabidopsis lyrata18.2121.4593.8565forward
CNT3076575Actinidia chinensisBrassica juncea19.8922.6191.5571forward
CNT30262244Actinidia chinensisBrassica rapa23.5327.7291.6784forward
CNT30652801Actinidia chinensisRosa chinensis27.1731.789.6997forward
CNT30687150Actinidia chinensisTriticum urartu18.4920.6290.9166forward
CNT30477933Actinidia chinensisArabidopsis halleri18.2121.4593.8565forward
CNT30361740Actinidia chinensisSorghum bicolor19.0522.389.7168forward
CNT30154558Actinidia chinensisPrunus persica24.9329.0889.8989forward
CNT30572433Actinidia chinensisVitis vinifera26.0516.8889.2593reverse complement
CNT30644781Actinidia chinensisCannabis sativa25.2138.6391.1190reverse complement
CNT3024632Actinidia chinensisPopulus trichocarpa23.8128.0591.7685forward
CNT30120686Actinidia chinensisCitrus clementina22.9727.2491.4682reverse complement
CNT30117631Actinidia chinensisOryza nivara27.7330.6585.8699forward
CNT30174907Actinidia chinensisVigna angularis27.7332.4689.999forward
CNT30724440Actinidia chinensisLupinus angustifolius24.0928.3888.3786forward

Expression of CNT30561829

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MREAGFTEQRQPPALYGGRITGWCCPGPLTAQWAGPNWTVTYFSF*

>peptide 2 (30 aa)
PGLVAQACDPSGGITVIGHGLSPEGWTCGC*

Sequence

>CNT30561829
TGCCGGGCTTGGTAGCGCAAGCCTGTGACCCAAGCGGGGGCATTACTGTGATTGGACATGGGCTGAGCCCGGAAGGTTGGACCTGCGGTTGCTAGATTCT
AGCCCGCCCGCTCCGAGTGGGGAGTTGGATCATGTGGCCCATTCGAAAGTCTGGGTCTCGTGGTTCCTAAAGTGGAGGGCAATGCGTGAGGCTGGTTTCA
CAGAGCAGCGACAACCTCCCGCTCTCTACGGTGGAAGGATAACGGGCTGGTGCTGCCCAGGCCCATTAACAGCCCAATGGGCTGGTCCTAATTGGACAGT
CACTTATTTTTCCTTTTAGTTTTAAGTAGATTTTCATTTAAGCCCTATAGTTTTTGA