Detailed information on CNT3058749


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Amborella trichopodaEucalyptus grandis20.5119.5192.8656reverse complement
CNT30316252Amborella trichopodaCorylus avellana20.8816.198.2557reverse complement
CNT30515285Amborella trichopodaJuglans regia20.887.5394.7457forward
CNT30373911Amborella trichopodaArabidopsis thaliana26.7424.4190.4173reverse complement
CNT30272829Amborella trichopodaChenopodium quinoa25.6422.891.4370forward
CNT30403379Amborella trichopodaBeta vulgaris20.5118.1892.8656forward
CNT30526005Amborella trichopodaPhaseolus vulgaris20.8818.8191.2357forward
CNT30503674Amborella trichopodaNicotiana attenuata21.6119.4191.5359forward
CNT3045920Amborella trichopodaPrunus dulcis21.2518.9594.8358forward
CNT30158859Amborella trichopodaPistacia vera26.3725.0991.6772reverse complement
CNT3095958Amborella trichopodaSolanum tuberosum21.2519.1489.6658forward
CNT3084371Amborella trichopodaVigna radiata20.8812.592.9857reverse complement
CNT30172987Amborella trichopodaTrifolium pratense20.1518.3390.9155forward
CNT30143764Amborella trichopodaMedicago truncatula21.2519.2189.6658forward
CNT30313675Amborella trichopodaCamelina sativa20.8819.2692.9857reverse complement
CNT30232760Amborella trichopodaAnanas comosus20.1512.0690.9155forward
CNT30714740Amborella trichopodaMalus domestica golden21.2518.8396.5558forward
CNT30155101Amborella trichopodaPrunus persica21.2510.4394.8358forward
CNT30410045Amborella trichopodaPapaver somniferum21.2519.5991.3858reverse complement
CNT3026903Amborella trichopodaPopulus trichocarpa21.2519.0898.2858forward
CNT30121042Amborella trichopodaCitrus clementina21.2519.2793.158reverse complement
CNT30176610Amborella trichopodaVigna angularis20.8810.1491.2357forward
CNT30723394Amborella trichopodaLupinus angustifolius21.2519.2191.3858forward
CNT3050536Amborella trichopodaCucumis sativus25.2722.6289.8669forward

Expression of CNT3058749

Peptides detected in this lncRNA

>peptide 1 (72 aa)
TEQRLPLTLKSGGDRVRLVDLVLKSGGDRVRPGFTEQRLPPALKSGGDRVRLVSQSSDYLPLLAVEGLHVRV*

Sequence

>CNT3058749
TCACAGAGCAGCGATTACCTCTCACTCTTAAGAGTGGAGGAGATCGCGTGAGGCTGGTAGATTTGGTACTTAAGAGTGGAGGAGATCGCGTGAGGCCTGG
TTTCACAGAGCAGCGATTACCTCCCGCTCTTAAGAGTGGAGGAGATCGCGTGAGGCTGGTTTCACAGAGCAGCGATTACCTCCCGCTCTTGGCAGTGGAA
GGATTGCACGTTCGTGTGTGATCTGCCCAATCCAAACCCTTGAGCTCCCAAACTCGCTTGGACAACCGCTTTT