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Detailed information on CNT30373911


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Arabidopsis thalianaEucalyptus grandis50.8452.9681.58152forward
CNT30316252Arabidopsis thalianaCorylus avellana21.7418.3692.3165forward
CNT30514280Arabidopsis thalianaJuglans regia20.749.4490.3262forward
CNT30698009Arabidopsis thalianaQuercus lobata34.1132.887.25102forward
CNT30616204Arabidopsis thalianaSesamum indicum26.0918.7188.4678reverse complement
CNT30272829Arabidopsis thalianaChenopodium quinoa25.7525.0888.3177reverse complement
CNT30727469Arabidopsis thalianaCorchorus capsularis50.845083.55152reverse complement
CNT30379440Arabidopsis thalianaManihot esculenta52.845082.28158forward
CNT30526769Arabidopsis thalianaPhaseolus vulgaris20.0720.4191.6760reverse complement
CNT30200314Arabidopsis thalianaPisum sativum21.427.7187.564forward
CNT30507383Arabidopsis thalianaNicotiana attenuata27.4226.8985.3782reverse complement
CNT30711418Arabidopsis thalianaGlycine max48.4947.781.38145reverse complement
CNT3045914Arabidopsis thalianaPrunus dulcis57.1955.5282.46171reverse complement
CNT30561830Arabidopsis thalianaActinidia chinensis22.0721.6492.4266forward
CNT30587521Arabidopsis thalianaMusa acuminata20.0718.3593.3360reverse complement
CNT3085911Arabidopsis thalianaVigna radiata20.071.859060reverse complement
CNT30541034Arabidopsis thalianaBrassica napus92.9890.2690.65278reverse complement
CNT30235538Arabidopsis thalianaBrassica oleracea92.9890.2690.29278reverse complement
CNT30172426Arabidopsis thalianaTrifolium pratense50.1749.6782.67150reverse complement
CNT30143764Arabidopsis thalianaMedicago truncatula21.421.1987.564reverse complement
CNT3060682Arabidopsis thalianaArabidopsis lyrata98.3395.4592.52294reverse complement
CNT3076575Arabidopsis thalianaBrassica juncea91.9787.5884275reverse complement
CNT30261151Arabidopsis thalianaBrassica rapa92.9890.2688.85278reverse complement
CNT30612441Arabidopsis thalianaArabis alpina89.386.6991.01267forward
CNT30232760Arabidopsis thalianaAnanas comosus22.0714.4790.9166reverse complement
CNT30714946Arabidopsis thalianaMalus domestica golden21.7411.1990.7765forward
CNT30623923Arabidopsis thalianaDaucus carota20.0719.749060reverse complement
CNT30479687Arabidopsis thalianaArabidopsis halleri98.6695.1690.51295reverse complement
CNT30155101Arabidopsis thalianaPrunus persica52.1728.0682.05156reverse complement
CNT30410045Arabidopsis thalianaPapaver somniferum20.420.6191.861forward
CNT30704539Arabidopsis thalianaPrunus avium57.1915.9584.21171forward
CNT3058749Arabidopsis thalianaAmborella trichopoda24.4126.7490.4173reverse complement
CNT3026903Arabidopsis thalianaPopulus trichocarpa31.4430.9287.2394reverse complement
CNT30319113Arabidopsis thalianaAsparagus officinalis22.418.3288.0667forward
CNT30121042Arabidopsis thalianaCitrus clementina22.0721.9390.9166forward
CNT30723384Arabidopsis thalianaLupinus angustifolius45.1544.4182.96135reverse complement
CNT3050536Arabidopsis thalianaCucumis sativus52.5151.4884.71157reverse complement

Expression of CNT30373911

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MRPEPSLEAHASTPNLEWAGQNIAQPEPGPMRSTQRPIPLLSPLGSQARVTEFDVQ

>peptide 2 (94 aa)
NRSGLLGHSGLGRQWPVILPPSRAGGGRCSVKPASRGLPHSRRHETRAFARSPCLNSQLGMGGPEYSPTRTRPNEIDPTSHPLIVSTWITSPRY*

Sequence

>CNT30373911
AATCGGAGCGGCTTATTGGGTCATAGTGGGCTCGGAAGGCAATGGCCCGTAATCCTTCCACCGTCAAGAGCGGGAGGTGGACGCTGCTCTGTGAAACCAG
CCTCACGCGGTCTCCCCCACTCTAGAAGACATGAGACCCGAGCCTTCGCTCGAAGCCCATGCCTCAACTCCCAACTTGGAATGGGCGGGCCAGAATATAG
CCCAACCCGAACCCGGCCCAATGAGATCGACCCAACGTCCCATCCCCTTATTGTCTCCACTTGGATCACAAGCCCGCGTTACTGAGTTCGACGTACAAT