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Detailed information on CNT3095958


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Solanum tuberosumEucalyptus grandis29.731.3686.6790reverse complement
CNT30618136Solanum tuberosumSesamum indicum21.7811.690.9166reverse complement
CNT30272829Solanum tuberosumChenopodium quinoa26.0725.7391.1479forward
CNT30727745Solanum tuberosumCorchorus capsularis24.0925.889.0473forward
CNT3069056Solanum tuberosumQuercus suber20.795.9690.4863forward
CNT30382472Solanum tuberosumManihot esculenta23.7623.6188.8972forward
CNT30158859Solanum tuberosumPistacia vera19.820.9191.6760reverse complement
CNT30634223Solanum tuberosumCapsicum annuum95.0598.6389.58288reverse complement
CNT30542706Solanum tuberosumBrassica napus20.1320.1390.1661forward
CNT30510922Solanum tuberosumSolanum lycopersicum99.0198.3692.33300reverse complement
CNT3059713Solanum tuberosumArabidopsis lyrata26.0725.7384.8179forward
CNT30262244Solanum tuberosumBrassica rapa20.1320.1390.1661forward
CNT30210362Solanum tuberosumHelianthus annuus23.122.887.1470forward
CNT30714740Solanum tuberosumMalus domestica golden24.4224.0390.5474forward
CNT30410257Solanum tuberosumPapaver somniferum22.4423.5391.1868reverse complement
CNT3029804Solanum tuberosumTheobroma cacao26.426.0688.7580forward
CNT3058749Solanum tuberosumAmborella trichopoda19.1421.2589.6658forward
CNT3026410Solanum tuberosumPopulus trichocarpa23.4323.3688.7371forward
CNT30121042Solanum tuberosumCitrus clementina28.0528.2485.8885reverse complement

Expression of CNT3095958

Peptides detected in this lncRNA

>peptide 1 (61 aa)
LSLVMWACNPNGGINVVECWAVPDGWAWWANFWLALSKLRVGSCGPIEEMGCLIPKVGWTA*

>peptide 2 (42 aa)
MGALMWWNVGLSQMVGLGGLISGLPYPSSELDHVAQLKKWAA*

Sequence

>CNT3095958
GCTGAGCTTAGTAATGTGGGCTTGTAACCCAAATGGGGGCATTAATGTGGTGGAATGTTGGGCTGTCCCAGATGGTTGGGCTTGGTGGGCTAATTTCTGG
CTTGCCCTATCCAAGCTCAGAGTTGGATCATGTGGCCCAATTGAAGAAATGGGCTGCTTGATTCCTAAAGTGGGGTGGACCGCGTGAGGCTGGTTTCACA
GAGCAACGAACAGCTCCCGCTCTGAGCAGTGGAAGGATAACGAGTCGGTGCCTTCCAAGTTCAGTAACACCTTATGGGCTGCTCCAATTAAACCACCACT
TTT