« Back to Malus domestica golden search


Detailed information on CNT30719063


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMALT000948, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Malus domestica goldenEucalyptus grandis20.6555.0583.54158reverse complement
CNT30381752Malus domestica goldenManihot esculenta13.233.0186.14101forward
CNT3059713Malus domestica goldenArabidopsis lyrata20.3950.8181.41156forward
CNT30128358Malus domestica goldenCorymbia citriodora13.9938.7787.85107reverse complement
CNT30409088Malus domestica goldenPapaver somniferum10.3324.1691.1479reverse complement

Expression of CNT30719063

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MARWTVPIEPTLFKLVQRRPTDVPIRRCDYGTEVQGRRGRGRPRKTLEETLRKDLEYLDLTKDMTQDRAQWRSKIYIADPTQ*

>peptide 2 (51 aa)
GEPNGVGTLVWSQLVGSVVALFWPARSKPGVEPCGLGEGSGFTIPRAEGTA*

>peptide 3 (92 aa)
GSQMVLERWSGLSWSGLSWLYSGPPAPSRELSRVDWAKAQASRFLERRAPRKAGFTEQRSPPALGSGRITGRCHPDPSWPAGPFQLNQRFSN*

>peptide 4 (31 aa)
RGAKWCWNAGLVSAGRVCRGSILARPLQAGS*

>peptide 5 (52 aa)
MLHSESFNIQALTKENSKNLAKKALVYLTQYVEMKESLFIDIPDKLQICTYT*

Sequence

>CNT30719063
AGGGGAGCCAAATGGTGTTGGAACGCTGGTCTGGTCTCAGCTGGTCGGGTCTGTCGTGGCTCTATTCTGGCCCGCCCGCTCCAAGCCGGGAGTTGAGCCG
TGTGGATTGGGCGAAGGCTCAGGCTTCACGATTCCTAGAGCGGAGGGCACCGCGTAAGGCTGGCTTCACAGAGCAACGATCACCTCCCGCCCTCGGCAGT
GGAAGGATAACGGGTCGGTGCCACCCGGATCCATCATGGCCCGCTGGACCGTTCCAATTGAACCAACGCTTTTCAAATTAGTGCAAAGAAGGCCTACTGA
CGTTCCGATTAGAAGATGCGACTATGGGACAGAGGTTCAGGGCCGAAGGGGTAGAGGAAGACCTAGGAAAACTTTGGAAGAGACTCTAAGAAAAGACTTA
GAGTACTTAGATCTAACGAAGGACATGACACAGGATCGAGCACAATGGCGTTCTAAGATTTATATAGCCGATCCCACTCAGTGACTTGGATTTTCCAAGT
CTCCAACCGAGAAGTTTTCCTCACTCGGGAAATTAAGGGAACACTACCCCAACCTACATGCTCCACTCAGAAAGCTTCAACATACAAGCTTTAACAAAAG
AAAATTCAAAGAACTTAGCGAAGAAGGCTTTGGTGTATTTAACACAATACGTTGAAATGAAGGAAAGCTTATTTATTGATATCCCCGATAAGCTACAAAT
ATGTACATATACATGAGTCAAAATAAGCACACAAGAGGGAGCCTTCACAAAGGTTGCTTAGGAGA