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Detailed information on CNT30704539


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Prunus aviumEucalyptus grandis14.7455.0582.91158forward
CNT30316252Prunus aviumCorylus avellana14.5544.0787.82156forward
CNT30547454Prunus aviumIpomoea triloba8.0226.2288.3786reverse complement
CNT30515285Prunus aviumJuglans regia15.5822.0684.43167reverse complement
CNT30373911Prunus aviumArabidopsis thaliana15.9557.1984.21171forward
CNT30616204Prunus aviumSesamum indicum8.0220.6288.3786reverse complement
CNT30272829Prunus aviumChenopodium quinoa7.0924.7692.1176reverse complement
CNT30727469Prunus aviumCorchorus capsularis8.1228.6288.5187reverse complement
CNT30379461Prunus aviumManihot esculenta22.4879.2881.74241reverse complement
CNT30404033Prunus aviumBeta vulgaris8.2128.4887.588reverse complement
CNT30526005Prunus aviumPhaseolus vulgaris6.1621.7890.9166reverse complement
CNT30711674Prunus aviumGlycine max7.6526.9786.5982reverse complement
CNT3048431Prunus aviumPrunus dulcis31.3487.596.43336reverse complement
CNT30158859Prunus aviumPistacia vera8.8633.191.5895forward
CNT30566737Prunus aviumActinidia chinensis8.5836.9586.9692forward
CNT30591720Prunus aviumMusa acuminata7.3724.7689.8779reverse complement
CNT30541074Prunus aviumBrassica napus8.7730.7287.2394reverse complement
CNT30235726Prunus aviumBrassica oleracea13.948.6983.22149reverse complement
CNT3059713Prunus aviumArabidopsis lyrata16.5157.6582.49177reverse complement
CNT30261535Prunus aviumBrassica rapa9.734.2185.58104reverse complement
CNT30612441Prunus aviumArabis alpina15.8655.1982.94170forward
CNT30212924Prunus aviumHelianthus annuus11.2939.6784.3121reverse complement
CNT30128358Prunus aviumCorymbia citriodora8.332.2588.7689forward
CNT30718148Prunus aviumMalus domestica golden18.8466.4587.62202reverse complement
CNT30478499Prunus aviumArabidopsis halleri16.657.9880.9178reverse complement
CNT30155246Prunus aviumPrunus persica28.0898.3797.01301reverse complement
CNT30408305Prunus aviumPapaver somniferum6.2523.1892.5467forward
CNT30572431Prunus aviumVitis vinifera5.8820.5288.8963forward
CNT3030049Prunus aviumTheobroma cacao8.9631.2789.5896reverse complement
CNT3026903Prunus aviumPopulus trichocarpa7.4626.3292.580reverse complement
CNT30318989Prunus aviumAsparagus officinalis6.6221.5888.7371reverse complement
CNT30121042Prunus aviumCitrus clementina7.5626.9191.3681forward
CNT3050759Prunus aviumCucumis sativus5.8820.5988.8963reverse complement

Expression of CNT30704539

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MTALEGSTTSNSRSPCKCWLLEAEPFCHHGIHSITPNQDLFNHDIITLL*

>peptide 2 (43 aa)
MTKFPALRLKKEKRFLVQLGQSSRPWRIRVAPTRYPSTAKSGR*

>peptide 3 (43 aa)
MGGPEDSQPEPDQLILGQCSSTSKPPLGLQAHVAELGDLTSSC*

>peptide 4 (33 aa)
MISTERCGISCKSQCLFRIRSWPSDNDLTFARAF

Sequence

>CNT30704539
CAGCCAATATGAAGTCCTAAAGTTTCTGAATTGAAAAGGAAAAAAATTGTCATCTTGTCTAGATGCTGAGTAACATGGTATGAAACATTCTATCACGGTT
TTTTTTATTTGTGGTGAGATTGGGATCCGAAAACCATTTTGAAGCATACCGATACCGGTGCTACAATGCGGCGAAACAGTTATCTTATATTTTTTGCCCC
AAGGATCTGTCGTAAGTTTGAGCCTTGAGGGTAAAAAATATGGAAGCAAAGAATCCCCAAAATTTGTGTGAAAGCTTACCTTGGCTAGAGGGAGTCCAAG
TAATGAACCAGTAAACATTTGTATCATCACAAGGGATGGCACCGGATCTAATACCATTCCCAAAGTACAGATTGAGCTTGGGATCAACTCCATGACTGCT
CTTGAAGGTAGCACAACCTCTAATAGCAGATCTCCCTGTAAATGCTGGCTGCTTGAAGCCGAGCCATTTTGCCACCACGGAATTCACTCCATCACACCCA
ACCAAGACCTATTCAATCACGACATTATTACGTTGCTTTGAAAGTACGTAAAAGTTTAAGTTGCTTTGTGGAACCATTAGGAAGAAAATGACAAAGTTTC
CAGCTTTGAGGTTAAAAAAAGAAAAAAGGTTTTTGGTTCAATTGGGACAGTCTAGCAGGCCATGGCGGATCCGAGTGGCACCGACCCGTTATCCTTCCAC
TGCCAAGAGCGGGAGGTAGTCGTTGCTCTGTGAAGCCAGCCTTACGCGGTGCCCTCCACTCTAGAAACCCAGTGACCAGAGCCTTCGCTCAAGCCACAGG
GTTCAACTCCTGGCTTGGAATGGGCGGGCCAGAAGATAGCCAACCCGAACCCGACCAGCTAATACTGGGACAATGTTCCAGCACCTCAAAGCCCCCACTC
GGGTTACAAGCTCACGTTGCTGAGCTCGGCGATCTAACCTCCTCCTGTTAGGTTTATGAAGTGTGGTTTATGATATCAACCGAGCGATGTGGGATAAGTT
GCAAAAGCCAGTGCCTCTTTAGGATAAGATCTTGGCCTTCAGATAATGACTTGACTTTTGCAAGGGCTTTTT