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Detailed information on CNT30264180


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Brassica rapaEucalyptus grandis26.8228.2290.1281reverse complement
CNT30515285Brassica rapaJuglans regia27.8111.188.184forward
CNT30372997Brassica rapaArabidopsis thaliana97.6840.6990.85295forward
CNT30381752Brassica rapaManihot esculenta26.4926.1488.7580forward
CNT30526259Brassica rapaPhaseolus vulgaris26.1625.988.6179forward
CNT30629861Brassica rapaVigna unguiculata26.1616.6788.6179forward
CNT30711674Brassica rapaGlycine max24.1724.0191.7873forward
CNT30158859Brassica rapaPistacia vera26.1627.5388.6179reverse complement
CNT3086859Brassica rapaVigna radiata26.1626.1691.1479forward
CNT30544072Brassica rapaBrassica napus10010099.01302forward
CNT30238127Brassica rapaBrassica oleracea100.9910094.75305forward
CNT30143579Brassica rapaMedicago truncatula23.5123.4388.7371forward
CNT3059454Brassica rapaArabidopsis lyrata97.6897.3690.51295forward
CNT3081558Brassica rapaBrassica juncea96.6936.4592.12292reverse complement
CNT30623316Brassica rapaDaucus carota25.525.3387.0177forward
CNT30477933Brassica rapaArabidopsis halleri97.6897.3689.83295forward
CNT30619930Brassica rapaCajanus cajan26.1613.1487.3479forward
CNT30706625Brassica rapaPrunus avium26.494.1887.580forward
CNT30644641Brassica rapaCannabis sativa26.8221.7792.5981forward
CNT3024632Brassica rapaPopulus trichocarpa26.1626.0791.1479forward
CNT30120686Brassica rapaCitrus clementina35.135.2287.74106reverse complement
CNT30174907Brassica rapaVigna angularis26.1625.991.1479forward

Expression of CNT30264180

Peptides detected in this lncRNA

>peptide 1 (40 aa)
SSSVARACDPCGDNKLMEHWPGPQVGSVVACSGLPSPSRE*

>peptide 2 (40 aa)
MREAGFTEQRSPPSLGSGRITAQSHSDPAWPGGSYPAEPSS

Sequence

>CNT30264180
GTCGAGCTCAGTAGCGAGGGCTTGTGACCCATGTGGGGACAATAAGCTGATGGAACACTGGCCCGGCCCACAGGTCGGATCTGTTGTGGCATGTTCTGGG
CTGCCCAGTCCAAGCCGAGAGTGACCCGTGTGTGTTGAGCGAAGGCTTGGCTCAGGCGGTTCCTAAAGTGGAGGGCAATGCGTGAGGCTGGTTTCACAGA
GCAGCGATCACCTCCCTCTCTCGGCAGTGGACGGATAACGGCTCAAAGCCACTCAGATCCAGCATGGCCTGGTGGTTCGTACCCAGCTGAACCATCATCT
TT