Detailed information on CNT30653438


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Rosa chinensisEucalyptus grandis28.5730.6690.9188reverse complement
CNT30547627Rosa chinensisIpomoea triloba24.687.5290.7976reverse complement
CNT30501219Rosa chinensisCoffea canephora25.3224.6192.3178reverse complement
CNT30272829Rosa chinensisChenopodium quinoa25.6525.7389.8779forward
CNT30526114Rosa chinensisPhaseolus vulgaris34.7435.285.98107forward
CNT30629861Rosa chinensisVigna unguiculata23.715.489.0473forward
CNT30507382Rosa chinensisNicotiana attenuata23.0523.2890.1471forward
CNT30708521Rosa chinensisGlycine max23.724.0190.4173forward
CNT30587521Rosa chinensisMusa acuminata28.5726.9190.9188forward
CNT3086859Rosa chinensisVigna radiata26.326.8291.3681forward
CNT30171637Rosa chinensisTrifolium pratense23.724.1789.0473forward
CNT30204160Rosa chinensisHelianthus annuus37.0137.2585.09114forward
CNT30623316Rosa chinensisDaucus carota25.9726.3288.7580forward
CNT30620685Rosa chinensisCajanus cajan33.7710.8786.54104forward
CNT30174902Rosa chinensisVigna angularis26.326.5691.3681forward

Expression of CNT30653438

Peptides detected in this lncRNA

>peptide 1 (62 aa)
PSLVTRAYNPSGDIKVLERWLRLSWSGQAQAHFRLAHSKQGVGLCGMSEGLGHIVPKAEGTA*

Sequence

>CNT30653438
GCCGAGCTTGGTAACGCGAGCTTATAACCCGAGTGGGGACATTAAGGTGTTGGAACGTTGGCTCCGTCTTAGCTGGTCGGGTCAGGCGCAAGCTCATTTC
CGACTTGCCCATTCCAAGCAAGGAGTTGGGTTGTGTGGCATGAGCGAAGGCCTGGGTCACATTGTCCCTAAAGCGGAGGGCACAGCGTGAGGCTGGTTTC
ACAGAGCAGCGATAACCTCCCGCTCCTTGCAGTGGAAGGATAACAGGTCGGTGCTGCCCTGATCCATTGTGGCCCGCTATACTCTGCCAATTCGGACCTT
CTCTTTTT