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Detailed information on CNT30572433

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535409	Vitis vinifera	Eucalyptus grandis	14.52	27.87	88.75	80	forward
CNT30703316	Vitis vinifera	Quercus lobata	16.7	29.97	88.04	92	reverse complement
CNT30501219	Vitis vinifera	Coffea canephora	17.06	29.65	85.11	94	forward
CNT30727290	Vitis vinifera	Corchorus capsularis	25.59	46.23	84.4	141	reverse complement
CNT30382474	Vitis vinifera	Manihot esculenta	14.52	26.4	87.5	80	reverse complement
CNT30526805	Vitis vinifera	Phaseolus vulgaris	14.88	27.06	87.8	82	reverse complement
CNT30504899	Vitis vinifera	Nicotiana attenuata	14.52	26.23	85	80	reverse complement
CNT30710967	Vitis vinifera	Glycine max	10.89	21.35	90	60	forward
CNT3045640	Vitis vinifera	Prunus dulcis	15.79	28.25	86.21	87	reverse complement
CNT30158859	Vitis vinifera	Pistacia vera	11.62	22.3	93.75	64	forward
CNT30223410	Vitis vinifera	Hordeum vulgare	11.98	21.43	87.88	66	reverse complement
CNT30391813	Vitis vinifera	Triticum turgidum	11.98	21.02	87.88	66	forward
CNT30561829	Vitis vinifera	Actinidia chinensis	16.88	26.05	89.25	93	reverse complement
CNT30591720	Vitis vinifera	Musa acuminata	12.52	21.63	88.41	69	reverse complement
CNT3084328	Vitis vinifera	Vigna radiata	11.62	21.05	89.06	64	reverse complement
CNT30538642	Vitis vinifera	Brassica napus	18.33	42.98	85.15	101	reverse complement
CNT30664085	Vitis vinifera	Triticum dicoccoides	11.98	21.29	87.88	66	reverse complement
CNT30261746	Vitis vinifera	Brassica rapa	18.33	42.98	85.15	101	reverse complement
CNT30612441	Vitis vinifera	Arabis alpina	18.33	32.79	86.14	101	forward
CNT30130300	Vitis vinifera	Lolium perenne	10.89	20.76	90	60	forward
CNT30652801	Vitis vinifera	Rosa chinensis	15.25	27.45	88.1	84	reverse complement
CNT30128358	Vitis vinifera	Corymbia citriodora	13.97	27.9	87.01	77	forward
CNT30716661	Vitis vinifera	Malus domestica golden	15.06	26.77	87.95	83	reverse complement
CNT30623923	Vitis vinifera	Daucus carota	13.25	24.01	87.67	73	reverse complement
CNT30477933	Vitis vinifera	Arabidopsis halleri	11.43	20.79	90.48	63	reverse complement
CNT30154558	Vitis vinifera	Prunus persica	15.79	28.43	87.36	87	reverse complement
CNT30318989	Vitis vinifera	Asparagus officinalis	13.43	22.49	86.49	74	reverse complement
CNT3099765	Vitis vinifera	Oryza rufipogon	11.8	20.44	89.23	65	reverse complement
CNT3050966	Vitis vinifera	Cucumis sativus	10.34	20.96	91.23	57	forward

Expression of CNT30572433

Peptides detected in this lncRNA

>peptide 1 (32 aa)
EEFHGINRAFACPTEVEWTGKFTCNFNLKKVS*

Sequence

>CNT30572433
GAAGAGTTCCATGGAATTAACAGGGCATTTGCATGCCCCACAGAAGTCGAATGGACTGGTAAATTTACATGCAATTTTAATCTGAAGAAGGTGTCATGAC
ATTGATGAATATATCCAAAAAATCTATAGGATATTCTGGGTGCAAATCAAATGGCTCACCAACTATTTTCAGAAACTAAACCCAGTCACTGATTTTGGCC
CCCATTTACCCATGACCCACTGGCTGGAATGAAGAAAAACAAAAGAGGTAAAAAGTGGTTGTCGGGTTGAGAGCGGCTGAGGAGGCGTCGTTGGGCCCGT
GGAGTACCAGCACGTTATCCTTCCACCGAAGGGAGCGGGAGGTGAACGCTGCTCTGTGAATCCAGCCTCACGCGGTGCCCTCCACTCTAGGAACCACGTC
ACCCAACCCTTCGGTCGGATCACAAGATTCAAACTCCCCACTTGGAACGGGCGAGCCAGTGTCTCAACCCCAGCGCACCCTACCTCTCCAGCCAAACCAA
CCTTCAACCACCTTCATGCCCTCACTTGAGTCACAAGCCCACGTTACCAGG