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Detailed information on CNT3024632


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Populus trichocarpaEucalyptus grandis48.8451.5786.49148reverse complement
CNT30547369Populus trichocarpaIpomoea triloba25.0810.2388.1676forward
CNT30372997Populus trichocarpaArabidopsis thaliana24.7510.3489.3375forward
CNT30501219Populus trichocarpaCoffea canephora28.3827.1390.786reverse complement
CNT30381728Populus trichocarpaManihot esculenta20.4620.1396.7762forward
CNT30526114Populus trichocarpaPhaseolus vulgaris35.6435.5386.11108forward
CNT30629861Populus trichocarpaVigna unguiculata28.0517.9388.2485forward
CNT30711674Populus trichocarpaGlycine max26.0725.9992.4179forward
CNT3093739Populus trichocarpaSolanum tuberosum30.6930.5984.9593forward
CNT30561829Populus trichocarpaActinidia chinensis28.0523.8191.7685forward
CNT30587521Populus trichocarpaMusa acuminata21.1219.5792.1964forward
CNT3086859Populus trichocarpaVigna radiata28.0528.1592.9485forward
CNT30544072Populus trichocarpaBrassica napus26.0726.1691.1479forward
CNT30509597Populus trichocarpaSolanum lycopersicum33.6635.2986.27102reverse complement
CNT30172405Populus trichocarpaTrifolium pratense24.7533.048875forward
CNT3059454Populus trichocarpaArabidopsis lyrata24.7524.7589.3375forward
CNT30264180Populus trichocarpaBrassica rapa26.0726.1691.1479forward
CNT30204138Populus trichocarpaHelianthus annuus34.9834.6486.79106forward
CNT30128358Populus trichocarpaCorymbia citriodora19.821.7493.3360reverse complement
CNT30477933Populus trichocarpaArabidopsis halleri24.7524.7589.3375forward
CNT30620685Populus trichocarpaCajanus cajan21.786.990.9166forward
CNT30154558Populus trichocarpaPrunus persica47.8547.3984.83145forward
CNT3029804Populus trichocarpaTheobroma cacao27.3927.0490.3683forward
CNT30174907Populus trichocarpaVigna angularis28.0527.8790.5985forward
CNT30725324Populus trichocarpaLupinus angustifolius30.0345.2786.8191forward

Expression of CNT3024632

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MAESSVMNFWPAHSKPRAELCDPSEGLGYMSPKVGGNA*

>peptide 2 (33 aa)
MREAGFTEQRQPPAPGSGRITGCNHLGSYGLMG*

Sequence

>CNT3024632
GCCAAGCCTGGTAGCGTGGGCTTGTGATCCAAGTGGAGGCATTAAGGTGATGGAACGTTGATCTTGTCCAGATGGCTGAGTCTAGTGTGATGAATTTCTG
GCCCGCCCATTCCAAGCCAAGAGCTGAGCTATGTGACCCCAGCGAAGGCTTGGGCTACATGTCTCCTAAAGTGGGGGGCAATGCGTGAGGCTGGTTTCAC
AGAGCAGCGACAACCTCCCGCTCCTGGCAGTGGAAGGATAACAGGCTGTAATCACCTAGGTTCATATGGTCTGATGGGCTGATAAAACTGGACCATTACT
TTT