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Detailed information on CNT30235726


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Brassica oleraceaEucalyptus grandis34.6436.9384.91106reverse complement
CNT30316252Brassica oleraceaCorylus avellana21.918.9392.5467reverse complement
CNT30514280Brassica oleraceaJuglans regia20.269.4490.3262reverse complement
CNT30703316Brassica oleraceaQuercus lobata20.9220.8592.1964forward
CNT30272829Brassica oleraceaChenopodium quinoa25.1625.0889.6177forward
CNT3070208Brassica oleraceaQuercus suber21.5725.8889.3966reverse complement
CNT30406606Brassica oleraceaBeta vulgaris21.921.6891.0467forward
CNT30200314Brassica oleraceaPisum sativum20.9227.7189.0664reverse complement
CNT30506770Brassica oleraceaNicotiana attenuata22.2222.389.7168forward
CNT30711188Brassica oleraceaGlycine max39.8740.1385.25122forward
CNT3096133Brassica oleraceaSolanum tuberosum21.922.1189.5567forward
CNT30587521Brassica oleraceaMusa acuminata21.2419.8892.3165forward
CNT30541676Brassica oleraceaBrassica napus100100.3393.79306forward
CNT30510805Brassica oleraceaSolanum lycopersicum24.8424.9286.8476forward
CNT30172426Brassica oleraceaTrifolium pratense49.0249.6784.67150forward
CNT30262041Brassica oleraceaBrassica rapa97.7198.0391.64299forward
CNT30612441Brassica oleraceaArabis alpina84.9784.4289.23260reverse complement
CNT30212924Brassica oleraceaHelianthus annuus45.4245.5782.73139forward
CNT30154558Brassica oleraceaPrunus persica20.9220.9289.0664forward
CNT30410045Brassica oleraceaPapaver somniferum19.6120.2793.3360reverse complement
CNT30572342Brassica oleraceaVitis vinifera21.2411.6790.7765reverse complement
CNT30704539Brassica oleraceaPrunus avium48.6913.983.22149reverse complement
CNT3029804Brassica oleraceaTheobroma cacao24.1824.189.1974forward
CNT3058191Brassica oleraceaAmborella trichopoda23.8623.7889.0473forward
CNT3026903Brassica oleraceaPopulus trichocarpa20.5920.7292.0663forward
CNT30319113Brassica oleraceaAsparagus officinalis20.927.9589.0664reverse complement
CNT30121042Brassica oleraceaCitrus clementina20.5920.9390.4863reverse complement
CNT30724440Brassica oleraceaLupinus angustifolius21.2421.4589.2365forward

Expression of CNT30235726

Peptides detected in this lncRNA

>peptide 1 (41 aa)
SSSVVWACNPSGDDKMMGRWVDLIGPGLVGLIMACPFQVGS*

Sequence

>CNT30235726
GTCGAGCTCGGTAGTGTGGGCTTGTAATCCAAGTGGAGACGACAAGATGATGGGACGTTGGGTCGATCTCATTGGGCCGGGTTTGGTTGGGCTTATTATG
GCCTGCCCATTCCAAGTTGGGAGTTGAAGCATGCGGGCTTGAGCGAAGGCTCAGGTCACGTGTTTCTTATAGTGGGGGAGACTGCGTGAGGCTGGTTTCA
CAGAGCAGCGTACACCTCCCGCTCTTGACGGTGGAAGGATAACGGGCCTTCGCCTTCCAAGCCCACTATGATCCAATAAGCCGATTCCGATTGGACCATC
ATCTTT