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Detailed information on CNT30158859


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Pistacia veraEucalyptus grandis29.2729.2791.6784forward
CNT30316252Pistacia veraCorylus avellana32.0625.9990.2292forward
CNT30547454Pistacia veraIpomoea triloba29.9726.2289.5386reverse complement
CNT30515285Pistacia veraJuglans regia33.112.5590.5395reverse complement
CNT30698009Pistacia veraQuercus lobata29.9727.6590.786forward
CNT30372997Pistacia veraArabidopsis thaliana25.4410.0790.4173reverse complement
CNT30617951Pistacia veraSesamum indicum24.397.492.8670reverse complement
CNT30272829Pistacia veraChenopodium quinoa24.3922.892.8670reverse complement
CNT30727290Pistacia veraCorchorus capsularis30.3128.5289.6687reverse complement
CNT3069056Pistacia veraQuercus suber34.159.2786.7398reverse complement
CNT30379440Pistacia veraManihot esculenta54.749.6884.08157forward
CNT30404033Pistacia veraBeta vulgaris38.3335.685.45110reverse complement
CNT30526005Pistacia veraPhaseolus vulgaris24.0422.7791.369reverse complement
CNT30632032Pistacia veraVigna unguiculata26.1312.589.3375forward
CNT30507383Pistacia veraNicotiana attenuata30.3128.5286.2187reverse complement
CNT30708521Pistacia veraGlycine max23.6922.3791.1868reverse complement
CNT3045920Pistacia veraPrunus dulcis49.4846.4186.62142reverse complement
CNT3095958Pistacia veraSolanum tuberosum20.9119.891.6760reverse complement
CNT30566737Pistacia veraActinidia chinensis32.437.3587.193forward
CNT30591720Pistacia veraMusa acuminata27.5324.7691.1479reverse complement
CNT3084371Pistacia veraVigna radiata23.3414.6992.5467forward
CNT30544072Pistacia veraBrassica napus27.5326.1688.6179reverse complement
CNT30509042Pistacia veraSolanum lycopersicum33.4531.3786.4696reverse complement
CNT30172221Pistacia veraTrifolium pratense25.7827.9289.1974reverse complement
CNT30143579Pistacia veraMedicago truncatula28.9227.3987.9583reverse complement
CNT3059454Pistacia veraArabidopsis lyrata25.4424.0990.4173reverse complement
CNT3081558Pistacia veraBrassica juncea27.539.8687.3479forward
CNT30264180Pistacia veraBrassica rapa27.5326.1688.6179reverse complement
CNT30612154Pistacia veraArabis alpina25.7824.3489.1974forward
CNT30652801Pistacia veraRosa chinensis41.8139.2286.67120reverse complement
CNT30128358Pistacia veraCorymbia citriodora37.6339.1388.89108forward
CNT30718148Pistacia veraMalus domestica golden39.3737.1788.5113reverse complement
CNT30623923Pistacia veraDaucus carota26.482588.1676reverse complement
CNT30477933Pistacia veraArabidopsis halleri25.4424.0990.4173reverse complement
CNT30619930Pistacia veraCajanus cajan22.310.6590.6264reverse complement
CNT30155101Pistacia veraPrunus persica49.4825.5486.62142reverse complement
CNT30408305Pistacia veraPapaver somniferum24.3924.2294.2970forward
CNT30572433Pistacia veraVitis vinifera22.311.6293.7564forward
CNT30704539Pistacia veraPrunus avium33.18.8691.5895forward
CNT30644781Pistacia veraCannabis sativa36.5945.0690.48105forward
CNT3030049Pistacia veraTheobroma cacao29.6227.6994.1285reverse complement
CNT3058749Pistacia veraAmborella trichopoda25.0926.3791.6772reverse complement
CNT3026903Pistacia veraPopulus trichocarpa25.7824.3495.9574reverse complement
CNT30318775Pistacia veraAsparagus officinalis23.6913.9692.6568forward
CNT30175002Pistacia veraVigna angularis25.7824.7591.8974reverse complement
CNT30723384Pistacia veraLupinus angustifolius24.0422.791.369reverse complement

Expression of CNT30158859

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MRLWPSLETRGSSPGLDWASQLLASLIPTQVIEPMFHHLKAPSWVTSSRYQ

>peptide 2 (63 aa)
VQLGQPMGHGESRWHRPVILPLPRAGGVRCSVKPASRGALHSSNHETLAFARDPWLISWLGLG*

Sequence

>CNT30158859
GTCCAGTTGGGTCAACCCATGGGCCATGGTGAGTCCAGGTGGCACCGGCCAGTGATCCTTCCACTGCCAAGAGCGGGAGGTGTTCGCTGCTCTGTGAAGC
CAGCCTCACGCGGTGCCCTCCACTCTAGTAACCATGAGACTCTGGCCTTCGCTAGAGACCCGTGGCTCATCTCCTGGCTTGGATTGGGCTAGCCAACTCT
TAGCCAGCCTGATCCCGACTCAAGTGATTGAGCCAATGTTCCACCATCTTAAAGCCCCCTCTTGGGTCACAAGCTCACGTTACCAAG