Detailed information on CNT3061108


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Arabidopsis lyrataOryza sativa24.4517.3994.6456forward
CNT30535409Arabidopsis lyrataEucalyptus grandis28.822390.9166forward
CNT30315642Arabidopsis lyrataCorylus avellana32.7515.5686.6775reverse complement
CNT30700605Arabidopsis lyrataQuercus lobata24.4511.1692.8656forward
CNT30501219Arabidopsis lyrataCoffea canephora20.5214.8391.4947forward
CNT30617951Arabidopsis lyrataSesamum indicum28.826.9890.9166reverse complement
CNT30272829Arabidopsis lyrataChenopodium quinoa24.4518.2491.0756reverse complement
CNT3070208Arabidopsis lyrataQuercus suber24.4521.9692.8656forward
CNT30403379Arabidopsis lyrataBeta vulgaris23.1417.2196.2353reverse complement
CNT3096457Arabidopsis lyrataSolanum tuberosum23.1417.3890.5753reverse complement
CNT3086859Arabidopsis lyrataVigna radiata23.1417.5594.3453reverse complement
CNT30509984Arabidopsis lyrataSolanum lycopersicum26.220.6988.3360forward
CNT30171787Arabidopsis lyrataTrifolium pratense20.0915.2395.6546reverse complement
CNT3017474Arabidopsis lyrataZea mays24.0217.6889.0955forward
CNT30652801Arabidopsis lyrataRosa chinensis41.9231.3790.6296reverse complement
CNT30596965Arabidopsis lyrataOryza meridionalis24.0215.3292.7355reverse complement
CNT30644693Arabidopsis lyrataCannabis sativa28.3820.1295.3865reverse complement
CNT3029804Arabidopsis lyrataTheobroma cacao29.6922.1591.1868reverse complement
CNT30103689Arabidopsis lyrataOryza rufipogon24.4514.3694.6456reverse complement
CNT30117631Arabidopsis lyrataOryza nivara24.4517.3494.6456reverse complement
CNT30174907Arabidopsis lyrataVigna angularis23.1417.3892.4553reverse complement

Expression of CNT3061108

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VQLRSAPYTAGSGRYSLLCETSLTQYPPL*

Sequence

>CNT3061108
GTCCAATTGAGATCGGCCCCATACACTGCCGGAAGCGGGAGGTATTCGCTGCTCTGTGAAACCAGCCTCACGCAATACCCTCCACTTTAAGAGCCACGAG
ATCCGAACCTTCGCTCAAACCACGTAGCACAGCTCCTGGCTTGGATTGGGCGAGTCAGTGAAAACCCAGCCTGAACCCGACCCCTTGTACCGAACCAAAG
TCCCAACTACATATTTGCCCTCACTTGAG