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Detailed information on CNT30382472


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Manihot esculentaEucalyptus grandis26.5628.2290.1281reverse complement
CNT30515285Manihot esculentaJuglans regia26.2310.5791.2580forward
CNT30616204Manihot esculentaSesamum indicum23.9317.5189.0473forward
CNT30272829Manihot esculentaChenopodium quinoa28.5228.3486.2187forward
CNT30727290Manihot esculentaCorchorus capsularis26.2326.239080forward
CNT30402231Manihot esculentaBeta vulgaris29.1828.887.6489forward
CNT30526756Manihot esculentaPhaseolus vulgaris27.8727.9685.8885forward
CNT30506943Manihot esculentaNicotiana attenuata31.831.885.5797forward
CNT3095958Manihot esculentaSolanum tuberosum23.6123.7688.8972forward
CNT30509597Manihot esculentaSolanum lycopersicum23.6124.9187.572reverse complement
CNT3061339Manihot esculentaArabidopsis lyrata26.2326.149080forward
CNT3023551Manihot esculentaPopulus trichocarpa22.6223.3191.369forward
CNT30103689Manihot esculentaOryza rufipogon25.920.2687.3479forward

Expression of CNT30382472

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MAGFGMAISWLAHSKPGSEPRDSIESWSFSWVLEWRVPREAGFTEQRLSPASGSGRITSRCHPVPHSQMDCSNWTTTF

>peptide 2 (41 aa)
PSRLTWACNPSGGCEVVGRCYNPDGWIRNGYLLARPFQAGI*

Sequence

>CNT30382472
GCCGAGCCGGTTGACGTGGGCTTGTAACCCAAGTGGGGGCTGTGAAGTGGTTGGACGTTGTTACAATCCAGATGGCTGGATTCGGAATGGCTATCTCCTG
GCTCGCCCATTCCAAGCCGGGATCTGAACCAAGAGACTCGATCGAAAGCTGGAGTTTCTCTTGGGTCCTAGAGTGGAGAGTACCGCGTGAGGCTGGTTTC
ACAGAGCAGCGACTATCTCCCGCTTCCGGCAGTGGAAGGATAACGAGTCGGTGTCACCCGGTTCCACATAGCCAGATGGATTGTTCTAATTGGACCACCA
CTTTT