CANTATAdb - search

Detailed information on CNT3081558

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535409	Brassica juncea	Eucalyptus grandis	10.11	28.22	87.65	81	forward
CNT30703316	Brassica juncea	Quercus lobata	10.49	27.36	88.1	84	reverse complement
CNT30372997	Brassica juncea	Arabidopsis thaliana	38.45	42.48	90.58	308	reverse complement
CNT3070208	Brassica juncea	Quercus suber	9.36	29.41	88	75	forward
CNT30379183	Brassica juncea	Manihot esculenta	8.24	23.24	89.39	66	forward
CNT30404033	Brassica juncea	Beta vulgaris	9.36	24.27	86.67	75	reverse complement
CNT30526655	Brassica juncea	Phaseolus vulgaris	8.74	32.26	90	70	reverse complement
CNT30711674	Brassica juncea	Glycine max	8.74	23.03	90	70	reverse complement
CNT3046253	Brassica juncea	Prunus dulcis	7.37	27.7	89.83	59	forward
CNT30158859	Brassica juncea	Pistacia vera	9.86	27.53	87.34	79	forward
CNT30634223	Brassica juncea	Capsicum annuum	9.74	26.71	85.9	78	forward
CNT30561830	Brassica juncea	Actinidia chinensis	8.11	21.31	95.38	65	forward
CNT30542892	Brassica juncea	Brassica napus	37.45	99.01	91.33	300	reverse complement
CNT30236426	Brassica juncea	Brassica oleracea	37.45	99.01	90.67	300	reverse complement
CNT30172426	Brassica juncea	Trifolium pratense	7.74	20.53	90.32	62	reverse complement
CNT30313675	Brassica juncea	Camelina sativa	36.83	99.66	89.49	295	forward
CNT3059454	Brassica juncea	Arabidopsis lyrata	36.95	97.69	90.88	296	reverse complement
CNT30264180	Brassica juncea	Brassica rapa	36.45	96.69	92.12	292	reverse complement
CNT30647270	Brassica juncea	Rosa chinensis	9.86	25.73	94.94	79	reverse complement
CNT30213201	Brassica juncea	Helianthus annuus	10.74	28.01	84.88	86	reverse complement
CNT30715507	Brassica juncea	Malus domestica golden	10.74	27.83	90.7	86	reverse complement
CNT30623435	Brassica juncea	Daucus carota	7.37	21.15	89.83	59	forward
CNT30477933	Brassica juncea	Arabidopsis halleri	36.95	97.69	89.53	296	reverse complement
CNT30153271	Brassica juncea	Prunus persica	8.99	23.76	90.28	72	reverse complement
CNT30409088	Brassica juncea	Papaver somniferum	8.36	20.49	89.55	67	forward
CNT30644641	Brassica juncea	Cannabis sativa	10.11	21.77	90.12	81	reverse complement
CNT3029804	Brassica juncea	Theobroma cacao	9.86	25.73	88.61	79	reverse complement
CNT3058191	Brassica juncea	Amborella trichopoda	8.74	22.8	88.57	70	reverse complement
CNT3026903	Brassica juncea	Populus trichocarpa	10.11	26.64	88.89	81	reverse complement
CNT30120686	Brassica juncea	Citrus clementina	15.48	41.2	84.68	124	forward
CNT30174907	Brassica juncea	Vigna angularis	7.62	20	95.08	61	reverse complement
CNT30726065	Brassica juncea	Lupinus angustifolius	7.87	20.45	92.06	63	reverse complement

Expression of CNT3081558

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MVCGGNEFASVTRNVICSREAEEHNCGFLAFKILAMNLRLQF*

>peptide 2 (32 aa)
RVPEMQSWPLQESQRAMNFVRCRGRHHCILSR*

Sequence

>CNT3081558
GTCGCGTTCCCGAAATGCAGAGCTGGCCTCTTCAAGAAAGCCAGCGAGCTATGAACTTTGTGCGGTGTAGAGGTCGCCATCATTGTATACTCTCCCGCTA
ATAAGCCTTTCTGGTTTGGTCATCCTTTTTTTTTTTTTTTTTGAACAATCTCGCTTGGGCAGCTAAAAGGTAACCGCAGGAAAACACAGCAGCGAGGAGC
GAGTTGAGTTTGGTGTTGAGCCAGGTGGAGGAAGAGAAGAACAAAAGTGAGGCAATGAGGAAAACGAATGAGATGGTCAAATGGTCTGTGGAGGAAATGA
GTTTGCTTCAGTTACAAGAAATGTAATCTGCTCTAGAGAAGCTGAGGAACACAATTGTGGTTTTCTTGCGTTTAAAATTCTAGCTATGAACTTGCGTTTA
CAGTTCTAGCTATGTACTTCTTCTTGAGTCATTGAAAAGGTATAACAGAATAAATTCGGCAATAAAAATTAATGGAATTTTGAAAAGAGAGTTGAAAATA
AAAAGTTGGTGGTTCAGCAGGGTACGAACCAGCAGGCCATGGTGGACCTGAGTGGCGTTGAGCCGTAATCCGTCCACTGCTGAGAGAGGGAGGTGATCGC
TGCTCTGTGAAACCAGCCTCACGCATTGCCCTCCACTTTAGGAACCGTCTGAGCCAAGCCTTCGCTCAACACACACGGACCACTCTCAGCTTGGACTGGG
CAGCCCAGAACAGTGCCACAACAGAGCCGACCCGTGGGCCGAGTCAGTGTTCCACCAACTTATTATCCCCGCTTGGGTTACAAGCTCTCGCTACTGAGCT
C