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Detailed information on CNT30515285


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Juglans regiaEucalyptus grandis20.6154.3687.18156reverse complement
CNT30315642Juglans regiaCorylus avellana31.0448.7685.53235forward
CNT30547454Juglans regiaIpomoea triloba11.3626.2286.0586forward
CNT30703316Juglans regiaQuercus lobata20.3450.1686.36154forward
CNT30499557Juglans regiaCoffea canephora20.2149.8483.01153reverse complement
CNT30272829Juglans regiaChenopodium quinoa10.8326.7189.0282forward
CNT30727469Juglans regiaCorchorus capsularis11.7629.2892.1389forward
CNT3070907Juglans regiaQuercus suber10.8325.6287.882reverse complement
CNT30382472Juglans regiaManihot esculenta10.5726.2391.2580forward
CNT30404033Juglans regiaBeta vulgaris11.6228.4889.7788forward
CNT30526769Juglans regiaPhaseolus vulgaris9.6424.8393.1573forward
CNT30507384Juglans regiaNicotiana attenuata11.7629.1887.6489forward
CNT30711418Juglans regiaGlycine max19.1547.783.45145forward
CNT3043300Juglans regiaPrunus dulcis22.1954.7285.12168forward
CNT30158859Juglans regiaPistacia vera12.5533.190.5395reverse complement
CNT30561829Juglans regiaActinidia chinensis14.5330.8187.27110forward
CNT30587521Juglans regiaMusa acuminata11.7627.2286.5289forward
CNT3084328Juglans regiaVigna radiata10.9627.390.3683forward
CNT30544072Juglans regiaBrassica napus11.127.8188.184forward
CNT30509042Juglans regiaSolanum lycopersicum11.4928.4386.2187forward
CNT30172221Juglans regiaTrifolium pratense19.1554.7282.07145forward
CNT30145967Juglans regiaMedicago truncatula16.2541.8482.93123forward
CNT30264180Juglans regiaBrassica rapa11.127.8188.184forward
CNT30612441Juglans regiaArabis alpina12.6831.1786.4696reverse complement
CNT30652801Juglans regiaRosa chinensis2151.9688.68159forward
CNT30128358Juglans regiaCorymbia citriodora11.6231.8889.7788reverse complement
CNT30716661Juglans regiaMalus domestica golden12.5530.6589.4795forward
CNT30479039Juglans regiaArabidopsis halleri10.4425.8288.6179forward
CNT30154558Juglans regiaPrunus persica21.1452.2985.62160forward
CNT30572452Juglans regiaVitis vinifera12.2923.9189.2593reverse complement
CNT30704539Juglans regiaPrunus avium22.0615.5884.43167reverse complement
CNT30644641Juglans regiaCannabis sativa20.7442.285.99157forward
CNT3030049Juglans regiaTheobroma cacao11.2327.6989.4185forward
CNT3058749Juglans regiaAmborella trichopoda7.5320.8894.7457forward
CNT3026410Juglans regiaPopulus trichocarpa13.3433.2293.07101forward
CNT30120686Juglans regiaCitrus clementina11.4928.989.6687reverse complement
CNT30175002Juglans regiaVigna angularis10.4426.4291.1479forward
CNT30724440Juglans regiaLupinus angustifolius11.127.7286.984forward
CNT3050857Juglans regiaCucumis sativus9.2522.889070forward

Expression of CNT30515285

Peptides detected in this lncRNA

>peptide 1 (66 aa)
FRDFLHSRATASHAPTILFSVPHRLAVHPSGSVVFDFSDSSKSFRESRILPPLKLFTEGFFLLFSE*

>peptide 2 (52 aa)
SVISSIPVQLLLTLPRFYFRSHTDLRFILPAPWFSIFLILRRVFVSLAYCLH*

>peptide 3 (33 aa)
MANYWPARSKPRAGPCDLGESLGDVVPRVEGTA*

Sequence

>CNT30515285
TTTCCGTGATTTCCTCCATTCCCGTGCAACTGCTTCTCACGCTCCCACGATTTTATTTTCGGTCCCACACAGACTTGCGGTTCATCCTTCCGGCTCCGTG
GTTTTCGATTTTTCTGATTCTTCGAAGAGTTTTCGTGAGTCTCGCATACTGCCTCCATTGAAGCTCTTCACTGAAGGATTTTTCCTTCTATTTTCGGAAT
GAAAAACTAGCTTGGAGGAGTTGGTTTCGATACCTGGCTTCGTCAAGGGCGCTCTTTTATTAGGGGTTTTACGCGTTCCCCAACATGAGAAGTGAGAACA
AATGAAGAGCGCAATCCCACATTGATAAGAAGCAAAGACATTCAATACTTTATAATCTCACAACAGGATAAGAAAGCTCACCGGGCTCAGTAACGCGAGC
CTATAACCTGAGTAGGGGCATCAAAGTGCTGGGACGCTGGCCTAATCCAACTGGTCGGATTCTAATGGCTAACTACTGGCCCGCCCGTTCCAAGCCAAGA
GCTGGGCCATGTGATTTGGGCGAAAGCCTGGGTGACGTGGTTCCTAGAGTGGAGGGCACAGCGTGAGGCTGGTTCCACAGAGCAGCGACTACCTCCCGCT
CCTGGCAGTGGAAGGATAACGGGCCGGTGCCATTCTGGATCCACCACGATCCGTTGGATTGACTCCAGCTGGACCATCATTTTTTTTCTTTATTAAAAAT
AAAGTTTTGACTTGTCGATAATTATCATATCAAAAAATTAGAATGATATTATTATTC