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Detailed information on CNT3044357


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Prunus dulcisEucalyptus grandis40.7943.2187.9124reverse complement
CNT30547454Prunus dulcisIpomoea triloba29.6127.4487.7890forward
CNT30703316Prunus dulcisQuercus lobata24.0123.7894.5273forward
CNT30617951Prunus dulcisSesamum indicum43.7514.0687.22133forward
CNT30727290Prunus dulcisCorchorus capsularis46.7146.5687.32142forward
CNT3069056Prunus dulcisQuercus suber23.366.7292.9671forward
CNT30526805Prunus dulcisPhaseolus vulgaris26.3226.488.7580forward
CNT30629861Prunus dulcisVigna unguiculata23.0314.779070forward
CNT30506770Prunus dulcisNicotiana attenuata34.2134.185.58104forward
CNT3096133Prunus dulcisSolanum tuberosum23.3623.4390.1471forward
CNT30566737Prunus dulcisActinidia chinensis49.3460.2483.33150reverse complement
CNT30587665Prunus dulcisMusa acuminata25.9925.4889.8779forward
CNT3086859Prunus dulcisVigna radiata23.0323.189070forward
CNT30538642Prunus dulcisBrassica napus34.2144.2686.54104forward
CNT30236855Prunus dulcisBrassica oleracea29.6129.1386.6790forward
CNT30510805Prunus dulcisSolanum lycopersicum23.6823.6188.8972forward
CNT30171637Prunus dulcisTrifolium pratense35.5335.7685.19108forward
CNT3061339Prunus dulcisArabidopsis lyrata30.2630.0786.9692forward
CNT3076575Prunus dulcisBrassica juncea29.6128.6686.6790forward
CNT30261746Prunus dulcisBrassica rapa34.2144.2686.54104forward
CNT30648233Prunus dulcisRosa chinensis50.6650.1688.96154forward
CNT30210362Prunus dulcisHelianthus annuus48.6848.2183.78148forward
CNT30128358Prunus dulcisCorymbia citriodora29.2832.2591.0189reverse complement
CNT30714946Prunus dulcisMalus domestica golden70.7237.0185.12215reverse complement
CNT30479039Prunus dulcisArabidopsis halleri35.5335.2986.11108forward
CNT30644781Prunus dulcisCannabis sativa28.6237.3493.187reverse complement
CNT3026903Prunus dulcisPopulus trichocarpa25.9925.9992.4179forward
CNT30318775Prunus dulcisAsparagus officinalis20.7212.9490.4863reverse complement
CNT30120686Prunus dulcisCitrus clementina25.6625.9194.8778reverse complement
CNT30175002Prunus dulcisVigna angularis2525.4289.4776forward

Expression of CNT3044357

Peptides detected in this lncRNA

>peptide 1 (55 aa)
PSYVALACDSSEGIEVVELWFNSSGRVGSCNLLTRPFQVVSWVMWSMRRLGLRVS*

>peptide 2 (74 aa)
MVQLIWQGWQLQSADSPIPSCELGHVVHAKAWAACLLERRVQREAGFTEQRKPPAHGSGRITGRCSTNPNCLMG*

Sequence

>CNT3044357
GCCGAGCTATGTTGCGCTAGCTTGTGACTCAAGCGAGGGTATTGAAGTGGTAGAACTATGGTTCAACTCATCTGGCAGGGTTGGCAGTTGCAATCTGCTG
ACTCGCCCATTCCAAGTTGTGAGTTGGGTCATGTGGTCCATGCGAAGGCTTGGGCTGCGTGTCTCTTAGAGCGGAGGGTACAGCGTGAGGCTGGTTTCAC
AGAGCAGCGAAAACCTCCCGCTCACGGCAGTGGAAGGATAACGGGTCGGTGCTCCACCAACCCAAATTGCCTGATGGGTTGAGACCAGTTGAACCACCAC
TTCT