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Detailed information on CNT30612441

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30535409	Arabis alpina	Eucalyptus grandis	48.7	52.26	82	150	forward
CNT30316252	Arabis alpina	Corylus avellana	49.03	42.66	85.43	151	forward
CNT30515285	Arabis alpina	Juglans regia	31.17	12.68	86.46	96	reverse complement
CNT30703316	Arabis alpina	Quercus lobata	46.1	46.25	83.8	142	reverse complement
CNT30373911	Arabis alpina	Arabidopsis thaliana	86.69	89.3	91.01	267	forward
CNT30499557	Arabis alpina	Coffea canephora	46.43	46.58	83.92	143	forward
CNT30727469	Arabis alpina	Corchorus capsularis	48.7	49.34	84.67	150	reverse complement
CNT3069056	Arabis alpina	Quercus suber	45.13	13.15	82.01	139	reverse complement
CNT30403856	Arabis alpina	Beta vulgaris	48.38	48.38	82.55	149	reverse complement
CNT30526114	Arabis alpina	Phaseolus vulgaris	46.43	47.04	83.22	143	reverse complement
CNT30200314	Arabis alpina	Pisum sativum	20.78	27.71	89.06	64	forward
CNT30507014	Arabis alpina	Nicotiana attenuata	28.57	28.48	85.23	88	reverse complement
CNT30711418	Arabis alpina	Glycine max	47.08	47.7	82.76	145	reverse complement
CNT3045914	Arabis alpina	Prunus dulcis	55.52	55.52	84.21	171	reverse complement
CNT3096457	Arabis alpina	Solanum tuberosum	28.25	28.52	85.06	87	reverse complement
CNT30541034	Arabis alpina	Brassica napus	86.69	86.69	87.64	267	reverse complement
CNT30235726	Arabis alpina	Brassica oleracea	84.42	84.97	89.23	260	reverse complement
CNT30172426	Arabis alpina	Trifolium pratense	36.04	36.75	89.19	111	reverse complement
CNT3076560	Arabis alpina	Brassica juncea	94.81	30.42	83.9	292	reverse complement
CNT30261151	Arabis alpina	Brassica rapa	86.69	86.69	86.52	267	reverse complement
CNT30653670	Arabis alpina	Rosa chinensis	45.45	34.06	84.29	140	reverse complement
CNT30203149	Arabis alpina	Helianthus annuus	47.73	47.88	82.99	147	reverse complement
CNT30716661	Arabis alpina	Malus domestica golden	47.73	47.42	83.67	147	reverse complement
CNT30623435	Arabis alpina	Daucus carota	18.18	20.07	92.86	56	forward
CNT30478499	Arabis alpina	Arabidopsis halleri	91.23	91.53	87.19	281	reverse complement
CNT30356369	Arabis alpina	Lactuca sativa	35.06	5.74	84.26	108	reverse complement
CNT30154450	Arabis alpina	Prunus persica	47.4	47.87	84.25	146	reverse complement
CNT30572433	Arabis alpina	Vitis vinifera	32.79	18.33	86.14	101	forward
CNT30704539	Arabis alpina	Prunus avium	55.19	15.86	82.94	170	forward
CNT30644675	Arabis alpina	Cannabis sativa	28.25	21.91	89.66	87	forward
CNT3030049	Arabis alpina	Theobroma cacao	25.65	25.73	87.34	79	reverse complement
CNT3026903	Arabis alpina	Populus trichocarpa	26.95	27.3	87.95	83	reverse complement
CNT30174902	Arabis alpina	Vigna angularis	48.7	49.18	82.67	150	reverse complement
CNT30723384	Arabis alpina	Lupinus angustifolius	46.1	46.71	84.51	142	reverse complement

Expression of CNT30612441

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGHSGLGRQWPVILPPSRAGSARCSVKPASRSLLHSRSHVTRAFAQAT*

Sequence

>CNT30612441
AAAAGTGATGGTCCAATTGAGGCCTGCTAATGGGTCATAGTGGGCTTGGAAGGCAATGGCCCGTTATCCTTCCACCGTCAAGAGCGGGAAGTGCACGCTG
CTCTGTGAAACCAGCCTCACGCAGTCTCCTCCACTCTAGGAGCCACGTAACCCGAGCCTTCGCTCAAGCCACATGACTCAACTCCCAACTTGGAATGGGC
AGGCCAGTTAATAGCCCAACCCGAACCCGGTCCAATTAGATCGACCCAACAGTCCCATCACCTTATTGTCTCCACTCGGATCACAAGCCCACGTTAACTA
AGCTCGAC