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Detailed information on CNT30272829


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30535409Chenopodium quinoaEucalyptus grandis26.7128.5792.6882reverse complement
CNT30316252Chenopodium quinoaCorylus avellana20.8518.0893.7564reverse complement
CNT30547454Chenopodium quinoaIpomoea triloba24.4322.878875forward
CNT30515285Chenopodium quinoaJuglans regia26.7110.8389.0282forward
CNT30703316Chenopodium quinoaQuercus lobata49.1949.1985.43151forward
CNT30373911Chenopodium quinoaArabidopsis thaliana25.0825.7588.3177reverse complement
CNT30501219Chenopodium quinoaCoffea canephora27.0426.1890.3683reverse complement
CNT30617951Chenopodium quinoaSesamum indicum25.088.1489.6177forward
CNT30727745Chenopodium quinoaCorchorus capsularis21.8223.6795.5267forward
CNT3069056Chenopodium quinoaQuercus suber23.786.9190.4173forward
CNT30382472Chenopodium quinoaManihot esculenta28.3428.5286.2187forward
CNT30406606Chenopodium quinoaBeta vulgaris70.0369.5891.16215forward
CNT30526114Chenopodium quinoaPhaseolus vulgaris29.9730.2688.0492forward
CNT30629861Chenopodium quinoaVigna unguiculata29.9719.4186.9692forward
CNT30506942Chenopodium quinoaNicotiana attenuata26.7126.7191.4682forward
CNT30711418Chenopodium quinoaGlycine max35.8336.1883.64110forward
CNT3045640Chenopodium quinoaPrunus dulcis26.3826.390.1281forward
CNT30158859Chenopodium quinoaPistacia vera22.824.3992.8670reverse complement
CNT30634223Chenopodium quinoaCapsicum annuum27.6929.1188.2485reverse complement
CNT3095958Chenopodium quinoaSolanum tuberosum25.7326.0791.1479forward
CNT30561829Chenopodium quinoaActinidia chinensis27.0423.2589.1683forward
CNT30587521Chenopodium quinoaMusa acuminata25.4123.8589.7478forward
CNT3086859Chenopodium quinoaVigna radiata29.6430.1390.1191forward
CNT30538642Chenopodium quinoaBrassica napus24.7632.3490.7976forward
CNT30235726Chenopodium quinoaBrassica oleracea25.0825.1689.6177forward
CNT30510805Chenopodium quinoaSolanum lycopersicum26.3826.5688.8981forward
CNT30172221Chenopodium quinoaTrifolium pratense44.6351.782.48137forward
CNT30145867Chenopodium quinoaMedicago truncatula35.8336.383.64110forward
CNT3061108Chenopodium quinoaArabidopsis lyrata18.2424.4591.0756reverse complement
CNT30261746Chenopodium quinoaBrassica rapa24.7632.3490.7976forward
CNT30612154Chenopodium quinoaArabis alpina24.124.3489.1974reverse complement
CNT30653438Chenopodium quinoaRosa chinensis25.7325.6589.8779forward
CNT30128358Chenopodium quinoaCorymbia citriodora25.0827.990.9177reverse complement
CNT30718168Chenopodium quinoaMalus domestica golden37.1337.2585.96114forward
CNT30623316Chenopodium quinoaDaucus carota27.3627.6385.7184forward
CNT30155101Chenopodium quinoaPrunus persica23.7813.1391.7873forward
CNT30408305Chenopodium quinoaPapaver somniferum21.8223.1894.0367reverse complement
CNT30572342Chenopodium quinoaVitis vinifera24.4313.4686.6775reverse complement
CNT30704539Chenopodium quinoaPrunus avium24.767.0992.1176reverse complement
CNT30644693Chenopodium quinoaCannabis sativa25.7324.4691.1479forward
CNT3030049Chenopodium quinoaTheobroma cacao23.7823.7891.7873forward
CNT3058749Chenopodium quinoaAmborella trichopoda22.825.6491.4370forward
CNT3026903Chenopodium quinoaPopulus trichocarpa26.3826.6491.3681forward
CNT30319113Chenopodium quinoaAsparagus officinalis24.439.328875reverse complement
CNT30121042Chenopodium quinoaCitrus clementina26.0626.5893.7580reverse complement
CNT30175002Chenopodium quinoaVigna angularis29.6430.4390.1191forward
CNT30724440Chenopodium quinoaLupinus angustifolius21.1721.4589.2365forward

Expression of CNT30272829

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RACDPSGSTTVMGQVFSQLGRVSGWHNAGSPYPS*

Sequence

>CNT30272829
CGCGAGCTTGTGACCCAAGTGGGAGCACTACTGTGATGGGACAGGTCTTCAGCCAATTGGGTCGGGTCAGTGGTTGGCATAATGCTGGCTCGCCCTATCC
AAGTTGAGAGTTGGCCCATGTGGGTTGGGCGAAGGCTCAATCTTCTTGGGCCCTAAAGTGGAGGGGACCGCGTGAGGCTGGTTTCACAGAGCAACGAAAA
CCTCCCGCTCTTGTCAGTGGAAGGATAACGGGCTTGCGCCTCCTTGGCCCATTAGTACTCACTTGGCTGATCTCCAATCGGACCATCACTTTTTTTTTTC
TTTTTTT